Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HXP32_RS08225 Genome accession   NZ_CP058340
Coordinates   1608489..1609520 (-) Length   343 a.a.
NCBI ID   WP_002842639.1    Uniprot ID   -
Organism   Campylobacter coli strain 20A420     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1603489..1614520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS08945 - 1603829..1603963 (-) 135 WP_002779408.1 hypothetical protein -
  HXP32_RS08175 (HXP32_08185) proB 1604042..1604797 (-) 756 WP_002785036.1 glutamate 5-kinase -
  HXP32_RS08205 (HXP32_08215) - 1605485..1606324 (-) 840 WP_002791653.1 DNA ligase -
  HXP32_RS08210 (HXP32_08220) - 1606324..1606986 (-) 663 WP_002780014.1 AMIN domain-containing protein -
  HXP32_RS08215 (HXP32_08225) - 1606976..1607179 (-) 204 WP_002779412.1 hypothetical protein -
  HXP32_RS08220 (HXP32_08230) eno 1607245..1608489 (-) 1245 WP_060787522.1 phosphopyruvate hydratase -
  HXP32_RS08225 (HXP32_08235) recA 1608489..1609520 (-) 1032 WP_002842639.1 recombinase RecA Machinery gene
  HXP32_RS08230 (HXP32_08240) - 1609630..1610493 (+) 864 WP_002783558.1 menaquinone biosynthesis family protein -
  HXP32_RS08235 (HXP32_08245) fliQ 1610505..1610774 (+) 270 WP_002779416.1 flagellar biosynthesis protein FliQ -
  HXP32_RS08240 (HXP32_08250) - 1610771..1611547 (+) 777 WP_002779417.1 UDP-N-acetylmuramate dehydrogenase -
  HXP32_RS08245 (HXP32_08255) - 1611656..1611829 (+) 174 WP_002779418.1 hypothetical protein -
  HXP32_RS08250 (HXP32_08260) - 1611834..1612595 (-) 762 WP_002780011.1 hypothetical protein -
  HXP32_RS08255 (HXP32_08265) - 1612632..1613396 (-) 765 WP_002780009.1 3'(2'),5'-bisphosphate nucleotidase CysQ -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37033.31 Da        Isoelectric Point: 4.9784

>NTDB_id=405225 HXP32_RS08225 WP_002842639.1 1608489..1609520(-) (recA) [Campylobacter coli strain 20A420]
MDDNKKKSLDAALKSLDKAFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGIPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMISGSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=405225 HXP32_RS08225 WP_002842639.1 1608489..1609520(-) (recA) [Campylobacter coli strain 20A420]
ATGGACGATAATAAGAAAAAATCGCTTGATGCCGCCTTAAAATCGCTCGATAAAGCTTTTGGCAAGGGCACTATTTTAAG
GCTTGGAGATAAGGAAGTAGAGCAGATTGATAGCATAGGAACAGGTTCTGTAGGACTTGATCTTGCACTTGGTATAGGCG
GAATTCCAAAAGGAAGAATTATTGAAATTTATGGGCCTGAAAGTTCAGGTAAAACAACTTTAACTTTGCATATTATAGCA
GAGTGTCAAAAAGCGGGTGGGGTTTGTGCCTTTATCGATGCTGAGCATGCTTTGGATGTAAAATATGCTAAAAATTTGGG
CGTAGATACAGATAATCTTTATATTTCTCAACCCGATTTTGGTGAGCAGGCTTTAGAGATCGTTGAAACCATAGCACGAA
GTGGGGCTATAGATTTGATAGTTGTAGATAGCGTTGCGGCACTTACTCCAAAAGCTGAAATCGAAGGCGATATGGGAGAT
CAGCATGTAGGGCTTCAAGCAAGACTTATGTCTCAAGCATTAAGAAAGCTTACAGGAATTGTCCATAAAATGAATACAAC
CGTGATTTTTATCAACCAAATTCGTATGAAAATTGGCGCTATGGGTTATGGAACTCCTGAAACAACAACAGGAGGAAATG
CACTCAAATTTTATGCTTCAGTGCGTTTAGATGTTAGAAAAGTAGCGACTTTAAAACAAAATGAAGAGCCTATTGGTAAC
CGTGTTAAAGTTAAAGTAGTAAAAAATAAAGTAGCACCTCCATTTAGACAAGCTGAATTTGATGTAATGTTTGGAGAGGG
TTTAAGCCGTGAGGGTGAATTGATCGATTATGGTGTAAAACTTGATATAGTAGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAATTCAAAAGCTTTCTTAAAAGAAAATCCAGAAATAGCTGATGAAATAACA
AAAGCGATTCAAAATTCTATGGGAATAGAAGGTATGATCAGTGGTAGCGAAGATGACGAAGGAGAAGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.959

100

0.98
  recA Helicobacter pylori 26695

79.573

95.627

0.761
  recA Helicobacter pylori strain NCTC11637

79.268

95.627

0.758
  recA Neisseria gonorrhoeae strain FA1090

65.396

99.417

0.65
  recA Neisseria gonorrhoeae MS11

65.396

99.417

0.65
  recA Staphylococcus aureus strain ATCC 12600

65.192

98.834

0.644
  recA Acinetobacter nosocomialis M2

63.478

100

0.638
  recA Acinetobacter baylyi ADP1

63.557

100

0.636
  recA Acinetobacter baumannii D1279779

62.391

100

0.624
  recA Glaesserella parasuis strain SC1401

65.031

95.044

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

96.793

0.609
  recA Pseudomonas stutzeri DSM 10701

63.914

95.335

0.609
  recA Ralstonia pseudosolanacearum GMI1000

63.415

95.627

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

63.303

95.335

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.58

94.461

0.601
  recA Vibrio cholerae strain A1552

63.58

94.461

0.601
  recA Streptococcus pneumoniae TIGR4

58.235

99.125

0.577
  recA Streptococcus pneumoniae R36A

58.235

99.125

0.577
  recA Streptococcus pneumoniae Rx1

58.235

99.125

0.577
  recA Streptococcus pneumoniae D39

58.235

99.125

0.577
  recA Streptococcus pneumoniae R6

58.235

99.125

0.577
  recA Streptococcus mitis NCTC 12261

58.359

95.918

0.56
  recA Streptococcus thermophilus LMD-9

56.012

99.417

0.557
  recA Streptococcus pyogenes NZ131

57.879

96.21

0.557
  recA Streptococcus mitis SK321

57.751

95.918

0.554
  recA Streptococcus mutans UA159

57.402

96.501

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

58.104

95.335

0.554
  recA Streptococcus thermophilus LMG 18311

55.718

99.417

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.494

92.128

0.548
  recA Lactococcus lactis subsp. cremoris KW2

56.839

95.918

0.545

Multiple sequence alignment