Detailed information NTG0039486

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: RIA_RS06965
• Genome accession: NC_017569
• Coordinates: 1465453..1466484 (+)
• Length: 343 a.a.
• NCBI ID: WP_004918236.1
• Uniprot ID: E4TBP8
• Organism: Riemerella anatipestifer RA-GD
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1460453..1471484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIA_RS06945 (RIA_1465)	-	1460649..1461317 (+)	669	WP_004918227.1	succinate dehydrogenase cytochrome b subunit	-
RIA_RS06950 (RIA_1466)	-	1461382..1463394 (+)	2013	WP_004918229.1	fumarate reductase/succinate dehydrogenase flavoprotein subunit	-
RIA_RS06955 (RIA_1467)	-	1463418..1464188 (+)	771	WP_004918231.1	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	-
RIA_RS06960 (RIA_1468)	dinB	1464274..1465356 (+)	1083	WP_013446916.1	DNA polymerase IV	-
RIA_RS06965 (RIA_1469)	recA	1465453..1466484 (+)	1032	WP_004918236.1	recombinase RecA	Machinery gene
RIA_RS06970 (RIA_1470)	-	1466629..1468245 (+)	1617	WP_014615124.1	CTP synthase	-
RIA_RS06975 (RIA_1471)	yidC	1468329..1470119 (+)	1791	WP_013446914.1	membrane protein insertase YidC	-
RIA_RS06980 (RIA_1472)	-	1470223..1470807 (-)	585	WP_013446913.1	ribonuclease HII	-

Sequence

Protein

• Length: 343 a.a.
• Molecular weight: 36868.17 Da
• Isoelectric Point: 6.0810

>NTDB_id=39486 RIA_RS06965 WP_004918236.1 1465453..1466484(+) (recA) [Riemerella anatipestifer RA-GD]
MAKTETTSPNDDKKKALAAVLEKLDKTYGKGTVMKLGDGTVDHNIEVIPSGSLGLDLALGVGGYPKGRIVEIYGPESSGK
TTLTLHAIAEAQKVGGTAAFIDAEHAFDMHYAEKLGINLEELIVSQPDNGEQALEIADSLIRSGGVDIVVVDSVAALTPK
AEIDGDMGDSKMGLHARLMSQALRKLTSSISKTKCTVIFINQLRDKIGVMFGSPETTTGGNALKFYASVRIDIRRSLSDT
GKIKDKSGEVIGNRTKVKVVKNKVAPPFKSAEFDIMYGEGVSKVGEILDVATDLDIIQKSGSWFSYQDTKLGQGRDTVKE
LIKDNPELAEELEAKIREKLQAK

Nucleotide

• Length: 1032 bp

>NTDB_id=39486 RIA_RS06965 WP_004918236.1 1465453..1466484(+) (recA) [Riemerella anatipestifer RA-GD]
ATGGCAAAGACTGAAACAACAAGTCCTAACGATGATAAAAAAAAGGCATTAGCAGCCGTATTAGAAAAACTAGATAAAAC
TTACGGTAAAGGTACCGTTATGAAACTAGGTGATGGTACGGTAGACCATAATATAGAGGTGATTCCGTCAGGTTCTTTAG
GGCTAGATTTGGCTTTAGGGGTAGGTGGTTATCCTAAGGGGAGAATTGTAGAAATCTACGGTCCAGAATCTTCTGGTAAA
ACTACATTAACGCTTCACGCAATTGCGGAAGCTCAAAAAGTAGGGGGAACAGCAGCATTTATAGATGCAGAACATGCTTT
TGATATGCACTATGCCGAAAAATTAGGCATCAATCTAGAAGAGCTTATCGTGTCTCAACCAGATAATGGAGAGCAGGCAT
TAGAAATTGCAGATAGCCTTATTCGTTCTGGAGGAGTGGATATTGTAGTGGTAGACTCTGTGGCAGCACTTACGCCTAAA
GCAGAGATTGATGGTGATATGGGAGATTCTAAAATGGGTCTTCACGCAAGACTGATGTCTCAAGCACTTAGAAAATTAAC
TTCTTCTATTTCTAAAACAAAATGTACTGTAATTTTCATCAACCAGTTGAGAGATAAAATTGGAGTAATGTTTGGTAGCC
CTGAAACAACAACGGGAGGTAACGCTCTTAAATTCTATGCTTCGGTAAGGATAGATATCAGACGCTCGTTGAGTGATACA
GGTAAGATTAAAGATAAATCTGGCGAAGTTATAGGTAACCGAACTAAAGTAAAAGTGGTTAAAAATAAAGTAGCTCCACC
ATTTAAGAGTGCTGAGTTTGATATTATGTATGGGGAAGGTGTGTCTAAAGTTGGTGAGATTTTAGATGTGGCTACAGATT
TAGATATTATCCAAAAGAGTGGTTCTTGGTTCAGTTATCAGGACACAAAGCTAGGACAAGGGCGTGATACGGTAAAGGAA
CTCATCAAAGATAATCCTGAACTTGCAGAAGAGCTAGAAGCAAAAATCAGAGAAAAATTACAAGCTAAATAG

Domains

Predicted by InterProScan.

• recA bacterial DNA recombination protein (RecA_N) (15-282)

3D structure

• AlphaFold DB: E4TBP8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	100	100	1
recA	Neisseria gonorrhoeae MS11	67.073	95.627	0.641
recA	Neisseria gonorrhoeae strain FA1090	67.073	95.627	0.641
recA	Glaesserella parasuis strain SC1401	63.037	100	0.641
recA	Helicobacter pylori 26695	64.458	96.793	0.624
recA	Helicobacter pylori strain NCTC11637	64.458	96.793	0.624
recA	Acinetobacter baylyi ADP1	63.772	97.376	0.621
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.855	96.793	0.618
recA	Acinetobacter baumannii D1279779	63.746	96.501	0.615
recA	Acinetobacter nosocomialis M2	63.444	96.501	0.612
recA	Bacillus subtilis subsp. subtilis str. 168	63.609	95.335	0.606
recA	Streptococcus pyogenes NZ131	61.721	98.251	0.606
recA	Ralstonia pseudosolanacearum GMI1000	65.615	92.42	0.606
recA	Streptococcus mutans UA159	60.411	99.417	0.601
recA	Pseudomonas stutzeri DSM 10701	61.377	97.376	0.598
recA	Streptococcus thermophilus LMG 18311	60.177	98.834	0.595
recA	Streptococcus thermophilus LMD-9	60.177	98.834	0.595
recA	Streptococcus mitis SK321	62.195	95.627	0.595
recA	Streptococcus mitis NCTC 12261	62.195	95.627	0.595
recA	Vibrio cholerae strain A1552	61.027	96.501	0.589
recA	Staphylococcus aureus strain ATCC 12600	61.027	96.501	0.589
recA	Vibrio cholerae O1 biovar El Tor strain E7946	61.027	96.501	0.589
recA	Streptococcus pneumoniae R6	60.725	96.501	0.586
recA	Streptococcus pneumoniae TIGR4	60.725	96.501	0.586
recA	Streptococcus pneumoniae D39	60.725	96.501	0.586
recA	Streptococcus pneumoniae Rx1	60.725	96.501	0.586
recA	Streptococcus pneumoniae R36A	60.725	96.501	0.586
recA	Lactococcus lactis subsp. cremoris KW2	60.486	95.918	0.58
recA	Latilactobacillus sakei subsp. sakei 23K	59.327	95.335	0.566
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	54.81	100	0.548