Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BATR1942_RS19875 Genome accession   NC_014639
Coordinates   4063309..4064457 (+) Length   382 a.a.
NCBI ID   WP_004430265.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4058309..4069457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS19855 (BATR1942_20560) - 4058916..4059590 (+) 675 WP_004430249.1 amino acid ABC transporter permease -
  BATR1942_RS19860 (BATR1942_20565) - 4059603..4060352 (+) 750 WP_013390756.1 amino acid ABC transporter ATP-binding protein -
  BATR1942_RS19865 (BATR1942_20570) - 4060368..4061519 (+) 1152 WP_004430254.1 M20 peptidase aminoacylase family protein -
  BATR1942_RS19870 (BATR1942_20575) - 4061516..4062862 (+) 1347 WP_004430256.1 MmgE/PrpD family protein -
  BATR1942_RS21150 - 4062905..4063114 (+) 210 Protein_4039 ATP-binding protein -
  BATR1942_RS19875 (BATR1942_20585) rapC 4063309..4064457 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  BATR1942_RS19880 (BATR1942_20590) phrC 4064441..4064560 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BATR1942_RS21155 - 4064695..4064802 (-) 108 WP_072053240.1 YjcZ family sporulation protein -
  BATR1942_RS21160 - 4065006..4065089 (-) 84 WP_370499808.1 YjcZ family sporulation protein -
  BATR1942_RS19885 (BATR1942_20595) - 4065220..4066584 (-) 1365 WP_004430267.1 aspartate kinase -
  BATR1942_RS19890 (BATR1942_20600) ceuB 4067017..4067967 (+) 951 WP_004430268.1 ABC transporter permease Machinery gene
  BATR1942_RS19895 (BATR1942_20605) - 4067960..4068907 (+) 948 WP_004430269.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45756.03 Da        Isoelectric Point: 4.8173

>NTDB_id=38817 BATR1942_RS19875 WP_004430265.1 4063309..4064457(+) (rapC) [Bacillus atrophaeus 1942]
MKSEVIPSSAVGQKINEWYKYIRTFSVPDAEILKAEIEREIEHMEDDPNLLLYFSLMEFRHQLMLDYLEPLEKLKIEDQP
SLSELLRNIDSNQADLKGLLDYYVNFFRGMHEFDKREFISAITYYKQAEKRLSFVADHIERAEFYFKVAEAYYYMKQTYF
SLIHIKNAYEIYAEQETYNVRIIQCHFVFGVNLMDERRFEQAARHFELALHMAESENKAQLVGRALYNIGLCYYNQDLLE
PAIDYFERAVSIFESNAIIKSLPQAYFLITQIYYKCKNNSKAVEYHSRGYEYAKETDDIDYMVKFEFLKTLYQAQPDEQG
IEKCFYYLKNKNMYADIEDLALVVAKYYYEQKNFEMSSSYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=38817 BATR1942_RS19875 WP_004430265.1 4063309..4064457(+) (rapC) [Bacillus atrophaeus 1942]
ATGAAGAGCGAGGTGATTCCTTCTTCAGCAGTCGGTCAAAAAATTAACGAGTGGTATAAGTATATTCGTACGTTCAGTGT
ACCGGACGCCGAAATTCTAAAAGCCGAGATTGAACGGGAAATTGAACATATGGAAGACGATCCGAACTTGCTGCTATATT
TCTCATTAATGGAATTCCGCCACCAGCTGATGCTTGATTATCTTGAGCCGTTAGAAAAATTAAAAATAGAGGACCAGCCC
AGCTTGTCAGAATTACTGCGCAACATTGACAGCAATCAGGCTGATTTAAAAGGGCTGCTTGATTATTATGTAAACTTTTT
TCGGGGAATGCACGAATTTGATAAGAGAGAATTCATTTCAGCCATCACCTATTACAAACAGGCTGAAAAAAGACTTTCCT
TTGTAGCGGATCATATTGAAAGAGCCGAGTTCTATTTTAAAGTGGCCGAAGCTTATTACTATATGAAACAGACGTATTTC
TCACTGATCCATATCAAAAATGCCTACGAAATATATGCCGAGCAAGAAACATATAATGTGAGAATTATCCAGTGTCATTT
TGTTTTCGGAGTAAATTTGATGGATGAAAGACGTTTCGAACAAGCCGCGCGCCATTTTGAACTCGCATTACATATGGCGG
AATCAGAAAATAAAGCACAATTGGTCGGAAGAGCGCTTTATAATATTGGGTTGTGTTATTACAACCAAGATCTTCTTGAG
CCTGCCATTGACTATTTTGAAAGAGCGGTTTCTATATTCGAAAGCAACGCCATCATTAAATCCCTTCCTCAGGCATATTT
TCTGATCACGCAGATTTATTATAAATGTAAAAATAATTCTAAAGCAGTGGAATATCACAGCAGGGGTTATGAATATGCTA
AAGAAACAGATGATATTGACTACATGGTGAAATTTGAATTTTTAAAAACTCTATATCAAGCCCAGCCGGATGAACAAGGA
ATCGAAAAATGCTTTTATTACCTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGCACTAGTAGTAGCTAAATA
TTACTATGAACAGAAAAACTTCGAAATGTCATCTTCCTACTTTCTCAAAGTAGAAGAGGCCAGAAAACAAATACAAAGGA
GTGAAGGTTTATATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_1)

(224-256)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

85.079

100

0.851
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571

Multiple sequence alignment