Detailed information NTG0037946

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: HPGAM_RS00780
• Genome accession: NC_017371
• Coordinates: 161384..162427 (+)
• Length: 347 a.a.
• NCBI ID: WP_000963113.1
• Uniprot ID: Q9ZMS7
• Organism: Helicobacter pylori Gambia94/24
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 156384..167427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPGAM_RS00745 (HPGAM_00755)	-	156443..156661 (+)	219	WP_001876875.1	cytochrome c oxidase, cbb3-type, CcoQ subunit	-
HPGAM_RS00750 (HPGAM_00760)	ccoP	156663..157541 (+)	879	WP_000346827.1	cytochrome-c oxidase, cbb3-type subunit III	-
HPGAM_RS00755 (HPGAM_00765)	-	157552..157758 (+)	207	WP_000670514.1	DUF4006 family protein	-
HPGAM_RS00760 (HPGAM_00775)	-	157859..158452 (+)	594	WP_000677506.1	hypothetical protein	-
HPGAM_RS00765 (HPGAM_00780)	-	158465..159046 (+)	582	WP_000660342.1	hypothetical protein	-
HPGAM_RS00770	-	159658..160425 (+)	768	WP_000506369.1	hypothetical protein	-
HPGAM_RS00775 (HPGAM_00790)	-	160422..161285 (-)	864	WP_000626268.1	menaquinone biosynthesis family protein	-
HPGAM_RS00780 (HPGAM_00795)	recA	161384..162427 (+)	1044	WP_000963113.1	recombinase RecA	Machinery gene
HPGAM_RS00785 (HPGAM_00800)	eno	162439..163719 (+)	1281	WP_000955682.1	phosphopyruvate hydratase	-
HPGAM_RS00790 (HPGAM_00805)	-	163712..163987 (+)	276	WP_000841057.1	hypothetical protein	-
HPGAM_RS00795 (HPGAM_00810)	-	164004..164600 (+)	597	WP_001895042.1	AMIN domain-containing protein	-
HPGAM_RS00800 (HPGAM_00815)	-	164605..165093 (+)	489	WP_001164313.1	shikimate kinase	-
HPGAM_RS00805 (HPGAM_00820)	-	165115..166071 (+)	957	WP_000952314.1	PDC sensor domain-containing protein	-
HPGAM_RS00810 (HPGAM_00825)	-	166068..167204 (-)	1137	WP_000028792.1	glycosyltransferase family 8 protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37623.31 Da
• Isoelectric Point: 5.3408

>NTDB_id=37946 HPGAM_RS00780 WP_000963113.1 161384..162427(+) (recA) [Helicobacter pylori Gambia94/24]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide

• Length: 1044 bp

>NTDB_id=37946 HPGAM_RS00780 WP_000963113.1 161384..162427(+) (recA) [Helicobacter pylori Gambia94/24]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
AGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGAAAGACCACTCTAAGCTTGCACATT
ATCGCAGAATGCCAAAAAAATGGGGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGACGTGTATTATGCTAAGAG
ATTGGGCGTGGATACAGAAAATTTACTCGTTTCCCAACCAAGCACGGGCGAAGAAGCCTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCCTTAAGGAAAATCACCGGTGTCTTGCACAAAATGAA
CACTACTCTCATTTTTATCAATCAAATAAGGATGAAGATCGGCATGACGGGTTATGGGAGTCCAGAGACCACAACCGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCGCTTTAAAACAAAACGAACAGCATATT
GGCAACAGGGCTAAAGCCAAAGTCGTTAAAAATAAAGTCGCTCCACCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTACGGCGTGAAATTAGACATCGTGGATAAGAGCGGGGCATGGCTTA
GCTACCAGGATAAAAAGTTAGGGCAAGGCAGAGAAAACGCTAAAGCTTTATTGAAAGAAGATAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATCGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterProScan.

• recA bacterial DNA recombination protein (RecA_N) (9-271)

3D structure

• AlphaFold DB: Q9ZMS7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Helicobacter pylori strain NCTC11637	98.847	100	0.988
recA	Helicobacter pylori 26695	98.271	100	0.983
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	78.049	94.524	0.738
recA	Staphylococcus aureus strain ATCC 12600	62.757	98.271	0.617
recA	Neisseria gonorrhoeae MS11	65.846	93.66	0.617
recA	Neisseria gonorrhoeae strain FA1090	65.846	93.66	0.617
recA	Acinetobacter nosocomialis M2	62.281	98.559	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	64.308	93.66	0.602
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	62.952	95.677	0.602
recA	Acinetobacter baumannii D1279779	63.303	94.236	0.597
recA	Acinetobacter baylyi ADP1	62.997	94.236	0.594
recA	Ralstonia pseudosolanacearum GMI1000	61.012	96.83	0.591
recA	Vibrio cholerae strain A1552	60.417	96.83	0.585
recA	Vibrio cholerae O1 biovar El Tor strain E7946	60.417	96.83	0.585
recA	Pseudomonas stutzeri DSM 10701	59.357	98.559	0.585
recA	Glaesserella parasuis strain SC1401	59.756	94.524	0.565
recA	Streptococcus pneumoniae R6	55.271	100	0.559
recA	Streptococcus pneumoniae R36A	55.271	100	0.559
recA	Streptococcus pneumoniae Rx1	55.271	100	0.559
recA	Streptococcus pneumoniae D39	55.271	100	0.559
recA	Streptococcus pneumoniae TIGR4	55.271	100	0.559
recA	Latilactobacillus sakei subsp. sakei 23K	54.062	100	0.556
recA	Streptococcus pyogenes NZ131	56.97	95.101	0.542
recA	Lactococcus lactis subsp. cremoris KW2	57.143	94.813	0.542
recA	Streptococcus mitis NCTC 12261	56.839	94.813	0.539
recA	Streptococcus mitis SK321	56.535	94.813	0.536
recA	Streptococcus mutans UA159	55.389	96.254	0.533
recA	Streptococcus thermophilus LMD-9	55.758	95.101	0.53
recA	Streptococcus thermophilus LMG 18311	55.758	95.101	0.53
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	55.521	93.948	0.522