Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SMI_RS09330 Genome accession   NC_013853
Coordinates   1901488..1902642 (-) Length   384 a.a.
NCBI ID   WP_001085455.1    Uniprot ID   D3HB29
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1896488..1907642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS09310 (smi_1835) rcrP 1896798..1898567 (-) 1770 WP_000731786.1 ABC transporter ATP-binding protein Regulator
  SMI_RS09315 (smi_1836) - 1898551..1899012 (-) 462 WP_000360516.1 MarR family winged helix-turn-helix transcriptional regulator -
  SMI_RS09320 (smi_1837) - 1899190..1899906 (-) 717 WP_000532885.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SMI_RS09325 (smi_1838) - 1900003..1901373 (-) 1371 WP_001036258.1 MATE family efflux transporter -
  SMI_RS09330 (smi_1839) recA 1901488..1902642 (-) 1155 WP_001085455.1 recombinase RecA Machinery gene
  SMI_RS09335 (smi_1840) cinA 1902697..1903953 (-) 1257 WP_000642685.1 competence/damage-inducible protein A Machinery gene
  SMI_RS09340 (smi_1841) brpA 1904031..1905086 (-) 1056 WP_000239268.1 biofilm formation/cell division transcriptional regulator BrpA -
  SMI_RS09345 (smi_1842) - 1905094..1905612 (-) 519 WP_000455529.1 GNAT family N-acetyltransferase -
  SMI_RS09350 (smi_1843) tsaE 1905602..1906045 (-) 444 WP_000288245.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SMI_RS09355 (smi_1844) comM 1906141..1906770 (-) 630 WP_000413915.1 competence protein Regulator
  SMI_RS09360 (smi_1845) ndk 1906904..1907326 (-) 423 WP_000438298.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41287.94 Da        Isoelectric Point: 4.7523

>NTDB_id=36338 SMI_RS09330 WP_001085455.1 1901488..1902642(-) (recA) [Streptococcus mitis B6]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADNPEVFDEIDHQVRVQFGLIDGEEAAENKKDEAAQVDSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=36338 SMI_RS09330 WP_001085455.1 1901488..1902642(-) (recA) [Streptococcus mitis B6]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCTGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAGGGTTCAATCATGCGTTTGGGTGAACGTGCCGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTGGCTCTTGACATTGCCCTCGGTTCAGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGACCA
GAATCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCGCAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCACTCGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCACAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGACTCAGGTGCTGTGGATCTTGTTGTGGTCGATTCAGTTGCT
GCCCTTGTACCTCGTGCGGAAATTGATGGCGATATTGGAGATAGTCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAGCTTGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGGAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTCTACGCATCAGTCCGTTTGGATGTTCGTGGA
AGCACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAAGAAACCAAAATCAAGGTCGTGAAAAACAA
GGTGGCTCCACCATTTAAGGAAGCCTTCGTTGAAATCATGTACGGAGAAGGGATTTCTAAGACTGGTGAACTCTTGAAAA
TCGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAGAAAATCGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGATAACCCAGAAGTCTTTGATGAGATTGACCATCAAGTCCGTGTTCAATTTGGTTTGAT
TGATGGAGAAGAAGCTGCTGAAAACAAAAAAGATGAAGCAGCTCAAGTAGACTCTGTGAATGAAGAAGTAACTCTTGACC
TAGGCGATGAGCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HB29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

99.219

100

0.992
  recA Streptococcus mitis SK321

99.219

100

0.992
  recA Streptococcus pneumoniae Rx1

94.072

100

0.951
  recA Streptococcus pneumoniae D39

94.072

100

0.951
  recA Streptococcus pneumoniae R6

94.072

100

0.951
  recA Streptococcus pneumoniae TIGR4

94.072

100

0.951
  recA Streptococcus mutans UA159

84.031

99.479

0.836
  recA Streptococcus pyogenes NZ131

83.99

99.219

0.833
  recA Lactococcus lactis subsp. cremoris KW2

78.977

91.667

0.724
  recA Latilactobacillus sakei subsp. sakei 23K

69.789

86.198

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.938

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

84.115

0.542
  recA Glaesserella parasuis strain SC1401

60.882

88.542

0.539
  recA Acinetobacter baumannii D1279779

60.411

88.802

0.536
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

85.417

0.531
  recA Vibrio cholerae strain A1552

61.92

84.115

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

84.115

0.521
  recA Acinetobacter baylyi ADP1

61.043

84.896

0.518
  recA Neisseria gonorrhoeae MS11

61.635

82.813

0.51
  recA Neisseria gonorrhoeae MS11

61.635

82.813

0.51
  recA Neisseria gonorrhoeae strain FA1090

61.635

82.813

0.51
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

85.677

0.503
  recA Pseudomonas stutzeri DSM 10701

58.589

84.896

0.497
  recA Helicobacter pylori strain NCTC11637

57.751

85.677

0.495
  recA Helicobacter pylori 26695

57.751

85.677

0.495
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492

Multiple sequence alignment