Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SMI_RS09310 Genome accession   NC_013853
Coordinates   1896798..1898567 (-) Length   589 a.a.
NCBI ID   WP_000731786.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1891798..1903567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS09290 (smi_1831) - 1893210..1893884 (-) 675 WP_000725708.1 LiaF transmembrane domain-containing protein -
  SMI_RS09295 (smi_1832) - 1893889..1894335 (-) 447 WP_000776602.1 LytTR family DNA-binding domain-containing protein -
  SMI_RS09300 (smi_1833) - 1894449..1894952 (-) 504 WP_000800902.1 phosphatase PAP2 family protein -
  SMI_RS09305 (smi_1834) rcrQ 1895048..1896808 (-) 1761 WP_000428271.1 ABC transporter ATP-binding protein Regulator
  SMI_RS09310 (smi_1835) rcrP 1896798..1898567 (-) 1770 WP_000731786.1 ABC transporter ATP-binding protein Regulator
  SMI_RS09315 (smi_1836) - 1898551..1899012 (-) 462 WP_000360516.1 MarR family winged helix-turn-helix transcriptional regulator -
  SMI_RS09320 (smi_1837) - 1899190..1899906 (-) 717 WP_000532885.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SMI_RS09325 (smi_1838) - 1900003..1901373 (-) 1371 WP_001036258.1 MATE family efflux transporter -
  SMI_RS09330 (smi_1839) recA 1901488..1902642 (-) 1155 WP_001085455.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65378.91 Da        Isoelectric Point: 6.2003

>NTDB_id=36337 SMI_RS09310 WP_000731786.1 1896798..1898567(-) (rcrP) [Streptococcus mitis B6]
MKKLAKRISRKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMVGMSFLAFLSVVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQSLTDKLNSITRESLTGIRVVRAYNAEEYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAPIARLPLFSDMIVFMSYAMQVVMGFLLMGALFIVLPRTMVSAKRINQVLDLH
SSIQNPAQVQLADENLKGQVEFKDVTFRYAANSEAVIENVSFKAEAGQTVAFIGSTGSGKSTLVNLIPRFYDVSAGEILV
DGVNVQDYALEDLRNKVGYIPQKAVLFSGDVKGNLDFGQSQETPLSEQAMWQALELAQSKNFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALVRKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=36337 SMI_RS09310 WP_000731786.1 1896798..1898567(-) (rcrP) [Streptococcus mitis B6]
ATGAAGAAATTAGCTAAACGAATTAGTAGAAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACTTGTTTTTCGGT
CTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTACGGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGT
TGTGGCAGCCGGCAAGCATGATGGTGGGAATGTCCTTTCTTGCCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCC
CGAGTGGCGGCTTCTTATACTAGTAGGTTGAGAAGTGATATTTTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAA
GAAATTCTCTATTCCCAGTCTCTTGACGCGTACTACCAATGACATTACTCAAGTTCAAATGTTGATTACCATGGGCTTGC
AAGTGGTAACGCGTGGTCCGATTATGGCTATCTGGGCTATCGGGAAGATTTTAGGCCATTCAGAATACTGGCTCTGGGCC
GTTCTTGTAGCAGTGATTGTCAATGTTTTGATGACGACCGTTTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
AAGTTTGACTGATAAACTGAACAGTATCACTCGTGAGAGTTTAACAGGTATTCGTGTTGTTCGCGCCTACAATGCTGAAG
AATACCAAAATGAAAAATTTGCAGCAGCAAATGATGAATTGACACGCTTGAATTTGTTTGTCAACCGTCTTATGGCTATT
TTGAACCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAACGACGC
TGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGTTTTCATGTCTTATGCTATGCAGGTTGTCATGGGCTTCC
TTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCCAAGCGCATTAATCAAGTTTTAGATTTGCAT
TCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGGCTGATGAAAACCTCAAAGGTCAGGTCGAATTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCGGTTATTGAGAATGTTAGCTTTAAAGCAGAAGCTGGTCAAACAGTGGCCTTTATTG
GGTCAACAGGTTCTGGTAAATCTACTCTGGTCAATCTGATTCCACGTTTTTACGACGTATCAGCAGGAGAAATTCTTGTA
GACGGTGTCAATGTTCAAGACTATGCCTTAGAAGATTTGCGCAACAAGGTTGGTTATATTCCTCAGAAAGCAGTTCTTTT
TTCAGGTGATGTCAAGGGTAATCTAGACTTTGGACAGAGTCAAGAAACACCACTTAGTGAGCAGGCTATGTGGCAAGCTT
TGGAGTTGGCCCAGTCTAAAAACTTTATCGAAGACAAGGAAGCGGGCTTGGCCTCAGAAGTGGCCCAAGGAGGAACCAAC
TTCTCAGGTGGTCAGAGACAGCGTCTGGCAATTGCGCGTGCCTTAGTTCGGAAGCCAGAAATCCTCATCTTTGATGACTC
CTTCTCAGCCTTGGACTACAAGACAGACCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACAAAGTCTATGACCAAGCTCA
TTGTTGCACAGCGCATTTCAACGATTATGGATGCAGATTTGATTTTGGTCTTGGATCAAGGGAAAGTCGTGGGGCAAGGC
ACCCACAAGGAACTTCTAGCTAATAACGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.223

100

0.676

Multiple sequence alignment