Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SMI_RS09305 Genome accession   NC_013853
Coordinates   1895048..1896808 (-) Length   586 a.a.
NCBI ID   WP_000428271.1    Uniprot ID   D3HB24
Organism   Streptococcus mitis B6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890048..1901808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS09280 (smi_1829) - 1890213..1891379 (+) 1167 WP_000163003.1 IS30-like element ISSmi1 family transposase -
  SMI_RS09285 (smi_1830) - 1891771..1892937 (+) 1167 WP_000163004.1 IS30-like element ISSmi1 family transposase -
  SMI_RS09290 (smi_1831) - 1893210..1893884 (-) 675 WP_000725708.1 LiaF transmembrane domain-containing protein -
  SMI_RS09295 (smi_1832) - 1893889..1894335 (-) 447 WP_000776602.1 LytTR family DNA-binding domain-containing protein -
  SMI_RS09300 (smi_1833) - 1894449..1894952 (-) 504 WP_000800902.1 phosphatase PAP2 family protein -
  SMI_RS09305 (smi_1834) rcrQ 1895048..1896808 (-) 1761 WP_000428271.1 ABC transporter ATP-binding protein Regulator
  SMI_RS09310 (smi_1835) rcrP 1896798..1898567 (-) 1770 WP_000731786.1 ABC transporter ATP-binding protein Regulator
  SMI_RS09315 (smi_1836) - 1898551..1899012 (-) 462 WP_000360516.1 MarR family winged helix-turn-helix transcriptional regulator -
  SMI_RS09320 (smi_1837) - 1899190..1899906 (-) 717 WP_000532885.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SMI_RS09325 (smi_1838) - 1900003..1901373 (-) 1371 WP_001036258.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64719.49 Da        Isoelectric Point: 4.9086

>NTDB_id=36336 SMI_RS09305 WP_000428271.1 1895048..1896808(-) (rcrQ) [Streptococcus mitis B6]
MENKKMSLWKQSKPYLAGLQFALLIAFLATILSNIITVYGPTRIKEMTNIIASGLETSVDVVAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAIAEKINSLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVVAVLVTM
FGMNWILALVTVVSTLIGFVFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNNRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMKDESHKERQLSDMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQTGISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVNL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=36336 SMI_RS09305 WP_000428271.1 1895048..1896808(-) (rcrQ) [Streptococcus mitis B6]
ATGGAAAATAAAAAAATGTCTCTCTGGAAACAGAGTAAACCCTATCTTGCAGGTCTCCAGTTTGCCCTTCTGATAGCCTT
TCTAGCAACAATCCTATCCAATATCATTACTGTATATGGTCCAACTCGCATCAAGGAAATGACCAATATCATTGCCAGTG
GTCTGGAAACAAGTGTGGATGTCGTGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTCATCTATGTAATTGGGCTTCTA
TCAAATTATTTGCAGGCATTTCTGTTTACAACAGCTATTCAACGTTTTTCAGAGCGTTTAAGAAGAGCTATTGCAGAGAA
AATCAATAGCCTACCATTAGGATATTTTGATGGACACTCTCAGGGGGATACTTTGTCTCGTGTAACCAATGACGTTGACA
CTGCAGCCCAGTCCCTTAATCAAAGTCTGGGAACAGTTCTTTCATCTAGTTTACTGGTCGTGGCAGTCTTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTGTCAACACTTATTGGTTTTGTTTTCGTGTCTGTCTTTATGGG
CAAATCACAGGGCTTTTTTAAGAGTCAGCAACAGGATTTGGCAGCTGTCAATGGCTATGTGGAGGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCCATCGAGAGTACGAAAGAAGAGTTTGCGAAATTAAACAATCGTCTGTATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATCGTTGGTGCAGCCTTGGCCTTAAATGGGCAGATCAGTATCGGGATTATCGTTGCCTTTATGGCTTACGTGCGTATCT
TTTCTCAGCCCCTTTCGCAAATCGCCCAAGGGATTACTAGTTTGCAGCAGGCTAGCGCAGCCATGGGGCGTGTCTTCGAA
TTCTTAGCTGAAGAGGAGATGAAAGATGAATCCCATAAAGAAAGACAATTGAGCGATATGAAAGGTCAAGTAGTCTTTGA
TCGAGTCTCCTTTGGTTATACACCAGAGCGAACCATTATCCATGACTTTTCTGCGACGGCTCATGCAGGTCAAAAGGTTG
CGATTGTCGGACCGACCGGAGCTGGTAAGACAACTATTGTCAATCTTTTGATGAAGTTCTATGAGATTGATAAGGGAAGT
ATTCGCATTGATGGTGTGGATACCAAGGAGATGAAGCGTTCGGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGAACCATTCGCGACAATCTTATCTATAACCAAACAGGTATTAGTGATGAGCGTGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCACCACTTTATCATGACCCTACCAGATGGTTACGATACCGTCTTGGATGATACAGTGAACTTG
TCTGTCGGGCAAAAACAACTCTTGACCATTGCTCGTGCTTTGCTGAAAGATGCTCCACTCCTAATTCTAGATGAGGCGAC
TTCTTCTGTTGATACCCGTACAGAGGAATTGATCCAGAAAGCTATGGACCGATTGATGGAAGGCAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACCATCCGAAATGCTGATCTGATTCTTGTTATGAAAGATGGGAATATCATCGAGCAAGGAAAT
CATGATGAGCTGATGGCGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HB24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.438

99.659

0.662

Multiple sequence alignment