Detailed information NTG0358305

Bioinformatically predicted

Overview

• Name: comEA
• Type: Machinery gene
• Locus tag: PSL001_RS09865
• Genome accession: NZ_CP039378
• Coordinates: 1603035..1603187 (+)
• Length: 50 a.a.
• NCBI ID: WP_233605424.1
• Uniprot ID: -
• Organism: Pediococcus pentosaceus strain SL001
• Function: dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1598035..1608187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSL001_RS08205 (PSL001_08205)	-	1599912..1601120 (+)	1209	WP_011673525.1	FtsW/RodA/SpoVE family cell cycle protein	-
PSL001_RS08210 (PSL001_08210)	-	1601122..1601382 (+)	261	WP_060743763.1	DUF2129 domain-containing protein	-
PSL001_RS08215 (PSL001_08215)	rsmD	1601379..1601930 (+)	552	WP_002833456.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
PSL001_RS08220 (PSL001_08220)	coaD	1601935..1602411 (+)	477	WP_060743762.1	pantetheine-phosphate adenylyltransferase	-
PSL001_RS09860	-	1602481..1602933 (+)	453	WP_233605423.1	SLBB domain-containing protein	-
PSL001_RS09865	comEA	1603035..1603187 (+)	153	WP_233605424.1	helix-hairpin-helix domain-containing protein	Machinery gene
PSL001_RS08230 (PSL001_08230)	-	1603206..1603688 (+)	483	WP_011673523.1	ComE operon protein 2	-
PSL001_RS08235 (PSL001_08235)	-	1603834..1605939 (+)	2106	WP_023440514.1	DNA internalization-related competence protein ComEC/Rec2	-
PSL001_RS08240 (PSL001_08240)	holA	1605936..1606955 (+)	1020	WP_002833451.1	DNA polymerase III subunit delta	-
PSL001_RS08245 (PSL001_08245)	rpsT	1606982..1607236 (-)	255	WP_002833450.1	30S ribosomal protein S20	-
PSL001_RS08250 (PSL001_08250)	rpsO	1607442..1607711 (+)	270	WP_002833449.1	30S ribosomal protein S15	-

Sequence

Protein

• Length: 50 a.a.
• Molecular weight: 5596.31 Da
• Isoelectric Point: 4.3494

>NTDB_id=358305 PSL001_RS09865 WP_233605424.1 1603035..1603187(+) (comEA) [Pediococcus pentosaceus strain SL001]
MTLNGVGDKKAEQIINYREQQGEFKSIEDLKQVQGIGDKIFEGLQDAITV

Nucleotide

• Length: 153 bp

>NTDB_id=358305 PSL001_RS09865 WP_233605424.1 1603035..1603187(+) (comEA) [Pediococcus pentosaceus strain SL001]
TTGACATTGAATGGTGTAGGAGATAAAAAAGCTGAACAAATTATTAATTATCGTGAACAACAGGGCGAATTTAAATCCAT
TGAAGATTTAAAGCAAGTACAGGGGATTGGTGATAAAATTTTTGAAGGACTACAAGATGCAATTACTGTATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (2-49)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA	Latilactobacillus sakei subsp. sakei 23K	67.347	98	0.66
comEA	Bacillus subtilis subsp. subtilis str. 168	54.167	96	0.52
comEA	Lactococcus lactis subsp. cremoris KW2	54.167	96	0.52
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.02	98	0.5
comEA	Staphylococcus aureus MW2	48	100	0.48
comEA/celA/cilE	Streptococcus mitis NCTC 12261	50	96	0.48
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	50	96	0.48
comEA/celA/cilE	Streptococcus pneumoniae D39	50	96	0.48
comEA/celA/cilE	Streptococcus pneumoniae Rx1	50	96	0.48
comEA/celA/cilE	Streptococcus pneumoniae R6	50	96	0.48
comEA	Staphylococcus aureus N315	48	100	0.48
comEA/celA/cilE	Streptococcus mitis SK321	50	96	0.48
comA	Synechocystis sp. PCC 6803	47.917	96	0.46
comEA	Acinetobacter baylyi ADP1	47.917	96	0.46
comEA	Streptococcus thermophilus LMD-9	46.939	98	0.46
comE1/comEA	Haemophilus influenzae Rd KW20	48.936	94	0.46
comE	Neisseria gonorrhoeae MS11	44.898	98	0.44
comE	Neisseria gonorrhoeae MS11	44.898	98	0.44
comE	Neisseria gonorrhoeae MS11	44.898	98	0.44
comE	Neisseria gonorrhoeae MS11	44.898	98	0.44
comEA	Acinetobacter baumannii strain A118	55	80	0.44
comEA/comE1	Glaesserella parasuis strain SC1401	43.75	96	0.42
comEA	Acinetobacter baumannii D1279779	52.5	80	0.42
comEA	Vibrio campbellii strain DS40M4	43.478	92	0.4
comEA	Vibrio parahaemolyticus RIMD 2210633	43.478	92	0.4
comEA	Vibrio cholerae C6706	52.778	72	0.38
comEA	Vibrio cholerae strain A1552	52.778	72	0.38
comEA	Legionella pneumophila str. Paris	50	76	0.38
comEA	Legionella pneumophila strain ERS1305867	50	76	0.38