Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MMOL_RS03010 Genome accession   NC_012968
Coordinates   629976..631199 (-) Length   407 a.a.
NCBI ID   WP_015831541.1    Uniprot ID   C6WUA5
Organism   Methylotenera mobilis JLW8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624976..636199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMOL_RS02990 (Mmol_0590) - 625389..626693 (+) 1305 WP_015831537.1 aminopeptidase P N-terminal domain-containing protein -
  MMOL_RS02995 (Mmol_0591) - 626700..627863 (+) 1164 WP_015831538.1 FAD-dependent monooxygenase -
  MMOL_RS03000 (Mmol_0592) - 627860..629056 (+) 1197 WP_015831539.1 FAD-dependent monooxygenase -
  MMOL_RS03005 (Mmol_0593) - 629193..629909 (+) 717 WP_015831540.1 DsbC family protein -
  MMOL_RS03010 (Mmol_0594) pilC 629976..631199 (-) 1224 WP_015831541.1 type II secretion system F family protein Machinery gene
  MMOL_RS03015 (Mmol_0595) pilB 631289..633013 (-) 1725 WP_015831542.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MMOL_RS03020 (Mmol_0596) - 633374..633577 (+) 204 WP_015831543.1 cold-shock protein -
  MMOL_RS03025 (Mmol_0597) icd 633688..634941 (-) 1254 WP_015831544.1 NADP-dependent isocitrate dehydrogenase -
  MMOL_RS03030 (Mmol_0598) - 634957..635511 (+) 555 WP_015831545.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44151.86 Da        Isoelectric Point: 9.6992

>NTDB_id=34763 MMOL_RS03010 WP_015831541.1 629976..631199(-) (pilC) [Methylotenera mobilis JLW8]
MAANPKASKEVIYTWVGKDKKGKIVKGEMKASGESFVSATLRRQGVTVTKVKKQSGFANTGKVTDKDITLFTRQLATMMK
SGVPLLQSFDIVGKGHSNPAVAKLLGDIKSDVETGSSLSAAFRKYPLYFDALFCNLISAGEQAGILDTLLDRLATYKEKI
QAIKSKIKSALFYPVSIIVVAFIITAVIMIFVVPAFKELFSSFGADLPGPTLVVMAISEFFVNWWWAIFGSIGFGLWFFF
YTWKRSLSMQATMDRLMLKVPVFGDLVRKATIARFARTMATMFSAGVPLVEALDSVAGASGNRVYYDATKRIQSEISTGT
SLTVAMQNAEVFPNMVLQMTAIGEESGALDSMLGKVADFYEGEVDDAVEALSSLMEPIIMVVLGVLIGGLVVALYLPIFK
LGQVVSG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=34763 MMOL_RS03010 WP_015831541.1 629976..631199(-) (pilC) [Methylotenera mobilis JLW8]
ATGGCAGCCAATCCTAAGGCATCAAAAGAAGTTATTTATACCTGGGTAGGTAAAGATAAAAAAGGCAAAATTGTTAAGGG
GGAAATGAAAGCATCTGGCGAATCATTTGTCAGTGCCACCTTACGCCGCCAAGGAGTTACTGTCACCAAAGTAAAAAAAC
AAAGTGGTTTTGCAAATACAGGTAAAGTCACGGATAAAGATATTACTTTATTTACACGTCAGCTTGCCACCATGATGAAA
TCTGGCGTTCCCTTGTTGCAATCTTTTGATATTGTGGGCAAAGGTCATAGCAATCCCGCTGTCGCCAAGCTGCTTGGGGA
CATCAAGTCTGATGTGGAAACAGGTAGCAGTCTAAGTGCAGCCTTCCGCAAATACCCTTTATACTTTGACGCATTATTCT
GCAACTTGATTAGCGCGGGCGAGCAAGCAGGTATTCTGGATACATTACTGGATAGACTCGCCACTTATAAAGAAAAAATT
CAAGCCATTAAGTCAAAAATAAAATCCGCATTGTTTTACCCAGTTTCTATTATTGTGGTTGCATTTATTATCACAGCAGT
GATTATGATTTTCGTGGTACCCGCATTTAAAGAGTTATTTTCTAGCTTTGGCGCAGATCTTCCCGGGCCAACCTTAGTCG
TAATGGCAATCTCTGAGTTTTTTGTAAATTGGTGGTGGGCAATATTTGGCTCTATTGGGTTCGGGCTATGGTTCTTTTTC
TACACATGGAAACGGTCACTCTCTATGCAAGCTACGATGGATAGACTAATGTTAAAAGTACCTGTATTTGGAGATTTAGT
CCGCAAGGCGACCATTGCAAGATTTGCACGAACCATGGCGACCATGTTCTCGGCAGGCGTACCCTTGGTTGAAGCCTTGG
ACTCGGTCGCTGGTGCGTCTGGGAATCGTGTGTATTACGATGCAACAAAAAGAATCCAGAGCGAGATTAGTACAGGTACC
AGCTTAACTGTTGCCATGCAGAATGCGGAGGTTTTCCCAAACATGGTGTTGCAAATGACGGCGATTGGTGAAGAGTCCGG
GGCATTAGACTCTATGCTAGGCAAAGTGGCTGATTTCTATGAGGGTGAGGTGGATGATGCCGTAGAAGCACTCTCCAGCC
TGATGGAACCTATCATTATGGTCGTGCTTGGCGTGCTAATTGGCGGCTTAGTCGTCGCGTTATATCTGCCTATTTTCAAA
CTTGGCCAGGTTGTAAGTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6WUA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.293

97.297

0.528
  pilC Pseudomonas stutzeri DSM 10701

52.985

98.771

0.523
  pilC Acinetobacter baumannii D1279779

50.99

99.263

0.506
  pilG Neisseria gonorrhoeae MS11

50.99

99.263

0.506
  pilG Neisseria meningitidis 44/76-A

50.495

99.263

0.501
  pilC Acinetobacter baylyi ADP1

50

97.789

0.489
  pilC Vibrio cholerae strain A1552

40.852

98.034

0.4
  pilC Vibrio campbellii strain DS40M4

40.25

98.28

0.396
  pilC Thermus thermophilus HB27

36.75

98.28

0.361

Multiple sequence alignment