Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SACTE_RS00495 Genome accession   NC_015953
Coordinates   124470..125540 (+) Length   356 a.a.
NCBI ID   WP_014044056.1    Uniprot ID   -
Organism   Streptomyces sp. SirexAA-E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119470..130540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SACTE_RS00470 (SACTE_0104) - 119860..121389 (+) 1530 WP_014044052.1 aromatic amino acid ammonia-lyase -
  SACTE_RS00475 (SACTE_0105) - 121529..121933 (+) 405 WP_014044053.1 nuclear transport factor 2 family protein -
  SACTE_RS00480 (SACTE_0106) - 122085..122774 (-) 690 WP_014044054.1 DUF6882 domain-containing protein -
  SACTE_RS00490 (SACTE_0108) - 123334..123948 (-) 615 WP_226995137.1 hypothetical protein -
  SACTE_RS00495 (SACTE_0109) recA 124470..125540 (+) 1071 WP_014044056.1 recombinase RecA Machinery gene
  SACTE_RS00500 (SACTE_0110) - 126015..126797 (-) 783 WP_014044057.1 hypothetical protein -
  SACTE_RS00505 (SACTE_0111) - 127093..128544 (-) 1452 WP_014044058.1 amidase -
  SACTE_RS00510 (SACTE_0112) - 128701..129312 (+) 612 WP_014044059.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37959.28 Da        Isoelectric Point: 5.7794

>NTDB_id=34285 SACTE_RS00495 WP_014044056.1 124470..125540(+) (recA) [Streptomyces sp. SirexAA-E]
MAGTDHEKALDTALAQIERKFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGSVAFVDAEHALDPEYAKKLGVDTDNLILSQPDNGEQALEIVDILIRSGAIDLIVIDSVAALVPRAEIEGEMG
DSHMGLQARLMSQALRKITSALSQTRTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGIDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILQKLGIGVAAKVAVAEDTDPAPDTARPLAGSAA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=34285 SACTE_RS00495 WP_014044056.1 124470..125540(+) (recA) [Streptomyces sp. SirexAA-E]
ATGGCAGGAACCGACCACGAGAAGGCACTGGACACCGCGCTCGCACAGATCGAGCGGAAGTTCGGCAAGGGTGCGGTGAT
GCGTCTCGGTGAGCGGCCGAACGAGCCGATCGAGGTGATCCCCACGGGATCGACCGCGCTCGACGTCGCGCTCGGCGTCG
GCGGTCTGCCGCGCGGCCGCGTGGTGGAGGTGTACGGCCCGGAGTCGTCCGGCAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCCCAGAAGGCCGGCGGGTCGGTGGCGTTCGTCGACGCCGAGCACGCCCTGGACCCCGAATACGCCAAGAAGCT
CGGTGTCGACACCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAACAGGCGCTGGAGATCGTCGACATCCTGATTC
GCTCCGGCGCGATCGACCTGATCGTGATCGACTCCGTCGCGGCCCTGGTGCCCCGTGCGGAGATCGAGGGCGAGATGGGC
GACTCCCACATGGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTCCGCAAGATCACCAGCGCGCTCAGCCAGACGAGGAC
GACAGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTGATGTTCGGTTCGCCGGAGACCACGACCGGCGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGGCGTATCGAGACGCTCAAGGACGGGATCGACGCGGTCGGCAAC
CGCACCCGAGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
GATCAGCCGTGAGGGCGGGCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTGGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCCTCCAGAAGCTCGGAATCGGAGTAGCGGCGAAGGTCGCGGTCGCGGAGGACACCGACCCCGCCCCCGACAC
CGCCCGGCCCTTGGCGGGAAGCGCCGCCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

64.553

97.472

0.629
  recA Neisseria gonorrhoeae strain FA1090

64.553

97.472

0.629
  recA Pseudomonas stutzeri DSM 10701

65.089

94.944

0.618
  recA Acinetobacter nosocomialis M2

63.557

96.348

0.612
  recA Staphylococcus aureus strain ATCC 12600

63.372

96.629

0.612
  recA Ralstonia pseudosolanacearum GMI1000

66.564

91.573

0.61
  recA Acinetobacter baylyi ADP1

63.158

96.067

0.607
  recA Acinetobacter baumannii D1279779

63.529

95.506

0.607
  recA Vibrio cholerae strain A1552

65.015

90.73

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.015

90.73

0.59
  recA Streptococcus thermophilus LMD-9

59.207

99.157

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

64.11

91.573

0.587
  recA Helicobacter pylori strain NCTC11637

60.641

96.348

0.584
  recA Helicobacter pylori 26695

60.641

96.348

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

91.573

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

92.416

0.579
  recA Streptococcus thermophilus LMG 18311

60.058

96.348

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

62.31

92.416

0.576
  recA Streptococcus pyogenes NZ131

61.818

92.697

0.573
  recA Streptococcus mutans UA159

61.631

92.978

0.573
  recA Glaesserella parasuis strain SC1401

63.24

90.169

0.57
  recA Streptococcus mitis SK321

60.725

92.978

0.565
  recA Streptococcus mitis NCTC 12261

60.725

92.978

0.565
  recA Streptococcus pneumoniae Rx1

60.423

92.978

0.562
  recA Streptococcus pneumoniae R36A

60.423

92.978

0.562
  recA Streptococcus pneumoniae D39

60.423

92.978

0.562
  recA Streptococcus pneumoniae R6

60.423

92.978

0.562
  recA Streptococcus pneumoniae TIGR4

60.423

92.978

0.562
  recA Lactococcus lactis subsp. cremoris KW2

61.538

91.292

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.169

0.539

Multiple sequence alignment