Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MDS_RS16800 Genome accession   NC_015410
Coordinates   3642453..3643496 (-) Length   347 a.a.
NCBI ID   WP_013716389.1    Uniprot ID   A0ABM5VV38
Organism   Ectopseudomonas mendocina NK-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3637453..3648496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS16775 (MDS_3288) rmf 3639312..3639527 (+) 216 WP_003244273.1 ribosome modulation factor -
  MDS_RS16780 (MDS_3289) - 3639609..3640631 (-) 1023 WP_013716385.1 quinone-dependent dihydroorotate dehydrogenase -
  MDS_RS16785 (MDS_3290) - 3640719..3640940 (-) 222 WP_013716386.1 DUF2835 domain-containing protein -
  MDS_RS16790 (MDS_3291) - 3641085..3641975 (+) 891 WP_013716387.1 DUF6685 family protein -
  MDS_RS16795 (MDS_3292) recX 3641980..3642441 (-) 462 WP_080558770.1 recombination regulator RecX -
  MDS_RS16800 (MDS_3293) recA 3642453..3643496 (-) 1044 WP_013716389.1 recombinase RecA Machinery gene
  MDS_RS16805 (MDS_3294) - 3643584..3644084 (-) 501 WP_013716390.1 CinA family protein -
  MDS_RS16810 (MDS_3295) mutS 3644265..3646832 (+) 2568 WP_013716391.1 DNA mismatch repair protein MutS -
  MDS_RS16815 (MDS_3296) fdxA 3646971..3647294 (+) 324 WP_013716392.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37212.60 Da        Isoelectric Point: 5.3157

>NTDB_id=33827 MDS_RS16800 WP_013716389.1 3642453..3643496(-) (recA) [Ectopseudomonas mendocina NK-01]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGKANAAKFLEDNQEVAREIEG
QIRQKLLVNSTPAKASADDLADAEVDF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=33827 MDS_RS16800 WP_013716389.1 3642453..3643496(-) (recA) [Ectopseudomonas mendocina NK-01]
ATGGACGAGAACAAGAAGCGCGCTTTGGCGGCTGCCCTGGGTCAGATCGAGAAGCAGTTCGGCAAGGGCGCAGTCATGCG
CATGGGCGATCATGAGCGCCAGGCGATTCCGGCCATTTCCACCGGTTCGCTGGGCCTGGACATCGCACTGGGCATTGGTG
GCCTGCCGAAGGGGCGTATCGTTGAAATTTACGGTCCGGAGTCTTCGGGTAAGACCACTTTGACCCTGTCGGTGATCGCT
GAGGCGCAGAAACTCGGTGCTACCTGCGCCTTCGTCGATGCCGAGCATGCGCTCGATCCCGACTACGCTGGCAAGCTCGG
CGTCAATGTCGACGACCTGCTGGTGTCGCAGCCAGACACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTATCGACGTGATTATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCGGAAATCGAAGGTGAGATGGGCGAC
ATGCACGTCGGTCTGCAGGCCCGACTGATGAGTCAGGCACTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCTGAAACCACCACCGGCGGTAACGCAC
TGAAATTCTACTCCTCGGTTCGCCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGCGAAGAAGTGGTGGGTAGCGAA
ACCCGCGTGAAGATCGTCAAGAACAAGGTCGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTGTACGGCAAGGGCAT
CTACCGTAACGGCGAGATCATCGATCTTGGCGTGCAACAGGGTCTGGTCGAGAAGTCGGGTGCCTGGTACAGCTATCAGG
GCAACAAGATCGGCCAAGGCAAGGCCAATGCCGCCAAGTTCCTGGAAGACAATCAGGAAGTGGCCCGCGAGATCGAAGGT
CAGATTCGCCAGAAGTTGCTGGTCAACAGTACTCCGGCCAAGGCTTCCGCCGACGACCTGGCTGACGCAGAAGTCGACTT
CTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.778

100

0.908
  recA Acinetobacter nosocomialis M2

74.631

97.695

0.729
  recA Acinetobacter baylyi ADP1

74.336

97.695

0.726
  recA Acinetobacter baumannii D1279779

74.336

97.695

0.726
  recA Vibrio cholerae strain A1552

74.006

94.236

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

94.236

0.697
  recA Glaesserella parasuis strain SC1401

70.674

98.271

0.695
  recA Ralstonia pseudosolanacearum GMI1000

72.171

94.236

0.68
  recA Neisseria gonorrhoeae MS11

71.914

93.372

0.671
  recA Neisseria gonorrhoeae strain FA1090

71.914

93.372

0.671
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.236

0.608
  recA Helicobacter pylori strain NCTC11637

63.636

95.101

0.605
  recA Helicobacter pylori 26695

63.03

95.101

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Staphylococcus aureus strain ATCC 12600

59.763

97.406

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus mitis NCTC 12261

55.908

100

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

58.485

95.101

0.556
  recA Streptococcus mitis SK321

56.471

97.983

0.553
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Streptococcus pneumoniae TIGR4

57.362

93.948

0.539
  recA Streptococcus pneumoniae R6

57.362

93.948

0.539
  recA Streptococcus pneumoniae D39

57.362

93.948

0.539
  recA Streptococcus pneumoniae R36A

57.362

93.948

0.539
  recA Streptococcus pneumoniae Rx1

57.362

93.948

0.539
  recA Streptococcus pyogenes NZ131

57.012

94.524

0.539
  recA Streptococcus thermophilus LMG 18311

57.231

93.66

0.536
  recA Streptococcus thermophilus LMD-9

57.231

93.66

0.536
  recA Lactococcus lactis subsp. cremoris KW2

56.656

93.084

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.763

92.507

0.516

Multiple sequence alignment