Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EQH88_RS18615 Genome accession   NZ_CP035161
Coordinates   3554852..3555574 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103862     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3549852..3560574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS18580 (EQH88_18580) fliW 3549991..3550422 (-) 432 WP_029725990.1 flagellar assembly protein FliW -
  EQH88_RS18585 (EQH88_18585) yviE 3550443..3551018 (-) 576 WP_014481045.1 DUF6470 family protein -
  EQH88_RS18590 (EQH88_18590) flgL 3551065..3551961 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  EQH88_RS18595 (EQH88_18595) flgK 3551972..3553495 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  EQH88_RS18600 (EQH88_18600) flgN 3553514..3553996 (-) 483 WP_014481048.1 flagellar protein FlgN -
  EQH88_RS18605 (EQH88_18605) flgM 3554012..3554278 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQH88_RS18610 (EQH88_18610) yvyF 3554359..3554778 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQH88_RS18615 (EQH88_18615) comFC 3554852..3555574 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  EQH88_RS18620 (EQH88_18620) comFB 3555538..3555834 (-) 297 WP_015483764.1 late competence protein ComFB -
  EQH88_RS18625 (EQH88_18625) comFA 3555894..3557285 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  EQH88_RS18630 (EQH88_18630) fakBA 3557391..3558236 (-) 846 WP_003227986.1 DegV family protein -
  EQH88_RS18635 (EQH88_18635) degU 3558334..3559023 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQH88_RS18640 (EQH88_18640) degS 3559106..3560263 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=334987 EQH88_RS18615 WP_029725992.1 3554852..3555574(-) (comFC) [Bacillus subtilis strain SRCM103862]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=334987 EQH88_RS18615 WP_029725992.1 3554852..3555574(-) (comFC) [Bacillus subtilis strain SRCM103862]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment