Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FXN57_RS01445 Genome accession   NZ_CP043005
Coordinates   281594..282649 (-) Length   351 a.a.
NCBI ID   WP_148363101.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain PN_696     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 276594..287649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN57_RS01425 (FXN57_01420) tal 277435..278388 (+) 954 WP_148329247.1 transaldolase -
  FXN57_RS01430 (FXN57_01425) recP/tkt 278520..280517 (+) 1998 WP_148323455.1 transketolase Machinery gene
  FXN57_RS01435 (FXN57_01430) - 280588..280977 (-) 390 WP_148323457.1 RidA family protein -
  FXN57_RS01440 (FXN57_01435) recX 281054..281512 (-) 459 WP_148363100.1 recombination regulator RecX -
  FXN57_RS01445 (FXN57_01440) recA 281594..282649 (-) 1056 WP_148363101.1 recombinase RecA Machinery gene
  FXN57_RS01450 (FXN57_01445) - 282794..284719 (-) 1926 WP_148363102.1 ABC transporter ATP-binding protein -
  FXN57_RS01455 (FXN57_01450) - 284800..284955 (+) 156 Protein_284 MarC family protein -
  FXN57_RS01460 (FXN57_01455) - 285046..285813 (+) 768 WP_148363065.1 IS5 family transposase -
  FXN57_RS01465 (FXN57_01460) - 285841..286305 (+) 465 Protein_286 MarC family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37906.40 Da        Isoelectric Point: 4.8893

>NTDB_id=334185 FXN57_RS01445 WP_148363101.1 281594..282649(-) (recA) [Aggregatibacter actinomycetemcomitans strain PN_696]
MATQEEKQKALDAALGQIEKQFGKGAIMKLGDSQKLDIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTSQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGKTNAMKWLKDNPEQAKFI
ESTLRDELLAHPESAITAEVENEAGNGDDFE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=334185 FXN57_RS01445 WP_148363101.1 281594..282649(-) (recA) [Aggregatibacter actinomycetemcomitans strain PN_696]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCACTCGACGCGGCGTTAGGTCAAATTGAAAAACAATTTGGTAAAGGCGCCAT
CATGAAACTCGGCGACAGCCAAAAACTGGACATTGAAGCGATTTCTACCGGTTCCTTCGGTCTTGACCTGGCACTAGGTA
TCGGCGGTTTGCCGATGGGGCGTATCGTGGAGATTTTCGGGCCGGAATCTTCAGGTAAAACTACTTTAACCCTTTCTGTG
ATTGCGGAAGCGCAAAAAACCGGCAAAACCTGTGCCTTTATTGATGCGGAACATGCTTTAGACCCGATTTATGCCTCCAA
ACTCGGCGTGGATGTAAAAGAACTTTTAGTTTCCCAGCCGGACAACGGTGAACAGGCGTTGGAAATTTGTGATGCTTTGG
TGCGTTCCGGCGCAGTAGATGTGATTATCGTTGACTCCGTTGCCGCCTTAACGCCGAAAGCGGAAATTGAAGGCGATATG
GGTGATTCCCACATGGGTTTACAAGCGCGTTTAATGTCTCAAGCGTTACGTAAACTCACCAGCCAAATTAAAAATGCCAA
CTGCTTGGTGATTTTCATTAACCAAATTCGGATGAAAATCGGCGTGATGTTCGGTAATCCGGAAACCACCACCGGCGGTA
ACGCGTTGAAATTCTATGCTTCCGTACGTTTGGATATTCGCCGCGTGGGTTCTATTAAAGAAGGCGATGAAGTTATCGGT
AACGAAACCCGTGTGAAAGTGGTGAAAAACAAAGTGGCGCCACCGTTCCGCCAAGTGGACTTCCAAATTCTGTACGGCGA
AGGTATTTCCAAAGAAAGCGAACTGATTGAGCTCGGCGTGAAACATAAACTCATCAGCAAAGCAGGTGCGTGGTACGCTT
ACCAAAACGAGAAAATCGGTCAGGGCAAAACCAATGCTATGAAATGGTTGAAAGACAATCCTGAACAAGCCAAATTTATC
GAAAGCACCCTACGTGATGAATTGTTGGCACATCCGGAATCTGCCATCACTGCGGAAGTGGAAAACGAAGCGGGTAATGG
CGACGATTTCGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

74.713

99.145

0.741
  recA Vibrio cholerae strain A1552

73.563

99.145

0.729
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.563

99.145

0.729
  recA Pseudomonas stutzeri DSM 10701

72.674

98.006

0.712
  recA Neisseria gonorrhoeae MS11

73.292

91.738

0.672
  recA Neisseria gonorrhoeae strain FA1090

73.292

91.738

0.672
  recA Acinetobacter baylyi ADP1

69.322

96.581

0.67
  recA Acinetobacter nosocomialis M2

71.077

92.593

0.658
  recA Ralstonia pseudosolanacearum GMI1000

70.552

92.877

0.655
  recA Acinetobacter baumannii D1279779

70.769

92.593

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

94.872

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.615

92.593

0.598
  recA Helicobacter pylori 26695

62.575

95.157

0.595
  recA Helicobacter pylori strain NCTC11637

62.575

95.157

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

63.354

91.738

0.581
  recA Staphylococcus aureus strain ATCC 12600

62.848

92.023

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.856

93.162

0.567
  recA Streptococcus mutans UA159

60

92.593

0.556
  recA Streptococcus mitis SK321

60.185

92.308

0.556
  recA Streptococcus mitis NCTC 12261

60.185

92.308

0.556
  recA Streptococcus pneumoniae R36A

59.327

93.162

0.553
  recA Streptococcus pneumoniae D39

59.327

93.162

0.553
  recA Streptococcus pneumoniae R6

59.327

93.162

0.553
  recA Streptococcus pneumoniae TIGR4

59.327

93.162

0.553
  recA Streptococcus pneumoniae Rx1

59.327

93.162

0.553
  recA Streptococcus pyogenes NZ131

58.769

92.593

0.544
  recA Streptococcus thermophilus LMD-9

58.769

92.593

0.544
  recA Streptococcus thermophilus LMG 18311

58.769

92.593

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

60.323

88.319

0.533
  recA Lactococcus lactis subsp. cremoris KW2

56.173

92.308

0.519

Multiple sequence alignment