Detailed information NTG0033094

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: HPSJM_RS00775
• Genome accession: NC_014560
• Coordinates: 159930..160973 (+)
• Length: 347 a.a.
• NCBI ID: WP_000963116.1
• Uniprot ID: -
• Organism: Helicobacter pylori SJM180
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 154930..165973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSJM_RS00740 (HPSJM_00795)	-	155520..155738 (+)	219	WP_001872571.1	cytochrome c oxidase, cbb3-type, CcoQ subunit	-
HPSJM_RS00745 (HPSJM_00800)	ccoP	155740..156618 (+)	879	WP_000346895.1	cytochrome-c oxidase, cbb3-type subunit III	-
HPSJM_RS00750 (HPSJM_00805)	-	156629..156835 (+)	207	WP_000670529.1	DUF4006 family protein	-
HPSJM_RS00755 (HPSJM_00815)	-	156936..157520 (+)	585	WP_001221990.1	hypothetical protein	-
HPSJM_RS00760 (HPSJM_00820)	-	157534..158115 (+)	582	WP_000660298.1	hypothetical protein	-
HPSJM_RS00765 (HPSJM_00825)	-	158203..158970 (+)	768	WP_000506298.1	hypothetical protein	-
HPSJM_RS00770 (HPSJM_00830)	-	158967..159830 (-)	864	WP_000626259.1	menaquinone biosynthesis family protein	-
HPSJM_RS00775 (HPSJM_00835)	recA	159930..160973 (+)	1044	WP_000963116.1	recombinase RecA	Machinery gene
HPSJM_RS00780 (HPSJM_00840)	eno	160986..162266 (+)	1281	WP_000955613.1	phosphopyruvate hydratase	-
HPSJM_RS00785 (HPSJM_00845)	-	162259..162534 (+)	276	WP_000146212.1	hypothetical protein	-
HPSJM_RS00790 (HPSJM_00850)	-	162551..163147 (+)	597	WP_013356325.1	AMIN domain-containing protein	-
HPSJM_RS00795 (HPSJM_00855)	-	163152..163640 (+)	489	WP_001164288.1	shikimate kinase	-
HPSJM_RS00800 (HPSJM_00860)	-	163662..164618 (+)	957	WP_000952282.1	PDC sensor domain-containing protein	-
HPSJM_RS00805 (HPSJM_00865)	-	164615..165718 (-)	1104	WP_000028848.1	glycosyltransferase family 8 protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37651.36 Da
• Isoelectric Point: 5.3408

>NTDB_id=33094 HPSJM_RS00775 WP_000963116.1 159930..160973(+) (recA) [Helicobacter pylori SJM180]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKVLLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide

• Length: 1044 bp

>NTDB_id=33094 HPSJM_RS00775 WP_000963116.1 159930..160973(+) (recA) [Helicobacter pylori SJM180]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATCTGGCTTTAGGAA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCACATT
ATTGCAGAATGCCAAAAAAATGGTGGCGTGTGCGCATTCATTGACGCTGAGCATGCCCTAGACGTGTATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCAAGCACGGGCGAAGAAGCCTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGACGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GCAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATTGCGGCTTTAAAGCAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCCAAAGTCGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTGGGGCAAGGCCGAGAAAACGCTAAAGTCCTATTGAAAGAAGATAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCATTGCCAGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterProScan.

• recA bacterial DNA recombination protein (RecA_N) (9-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Helicobacter pylori strain NCTC11637	98.559	100	0.986
recA	Helicobacter pylori 26695	97.983	100	0.98
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	77.744	94.524	0.735
recA	Neisseria gonorrhoeae MS11	66.154	93.66	0.62
recA	Neisseria gonorrhoeae strain FA1090	66.154	93.66	0.62
recA	Staphylococcus aureus strain ATCC 12600	62.757	98.271	0.617
recA	Acinetobacter nosocomialis M2	62.281	98.559	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	64.308	93.66	0.602
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	62.952	95.677	0.602
recA	Acinetobacter baumannii D1279779	63.303	94.236	0.597
recA	Acinetobacter baylyi ADP1	62.997	94.236	0.594
recA	Ralstonia pseudosolanacearum GMI1000	61.012	96.83	0.591
recA	Vibrio cholerae strain A1552	60.417	96.83	0.585
recA	Vibrio cholerae O1 biovar El Tor strain E7946	60.417	96.83	0.585
recA	Pseudomonas stutzeri DSM 10701	59.357	98.559	0.585
recA	Glaesserella parasuis strain SC1401	59.756	94.524	0.565
recA	Streptococcus pneumoniae R6	55.271	100	0.559
recA	Streptococcus pneumoniae R36A	55.271	100	0.559
recA	Streptococcus pneumoniae Rx1	55.271	100	0.559
recA	Streptococcus pneumoniae D39	55.271	100	0.559
recA	Streptococcus pneumoniae TIGR4	55.271	100	0.559
recA	Latilactobacillus sakei subsp. sakei 23K	54.062	100	0.556
recA	Streptococcus pyogenes NZ131	56.97	95.101	0.542
recA	Lactococcus lactis subsp. cremoris KW2	57.143	94.813	0.542
recA	Streptococcus mitis NCTC 12261	56.839	94.813	0.539
recA	Streptococcus mitis SK321	56.535	94.813	0.536
recA	Streptococcus mutans UA159	55.389	96.254	0.533
recA	Streptococcus thermophilus LMG 18311	55.758	95.101	0.53
recA	Streptococcus thermophilus LMD-9	55.758	95.101	0.53
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	55.215	93.948	0.519