Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LLKF_RS06490 Genome accession   NC_013656
Coordinates   1335753..1336463 (-) Length   236 a.a.
NCBI ID   WP_268746235.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis KF147     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330753..1341463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLKF_RS06460 - 1331503..1331793 (+) 291 WP_041167909.1 hypothetical protein -
  LLKF_RS06465 (LLKF_1279) - 1331857..1332678 (-) 822 WP_012897830.1 dihydrodipicolinate synthase family protein -
  LLKF_RS06470 (LLKF_1280) - 1332770..1333972 (-) 1203 WP_012897831.1 MFS transporter -
  LLKF_RS06475 (LLKF_1281) - 1333944..1334645 (-) 702 WP_012897832.1 B3/4 domain-containing protein -
  LLKF_RS06480 (LLKF_1282) - 1334664..1335197 (-) 534 WP_012897833.1 GNAT family N-acetyltransferase -
  LLKF_RS06485 (LLKF_1283) - 1335198..1335653 (-) 456 WP_012897834.1 MarR family winged helix-turn-helix transcriptional regulator -
  LLKF_RS06490 (LLKF_1284) recA 1335753..1336463 (-) 711 WP_268746235.1 DNA recombination/repair protein RecA Machinery gene
  LLKF_RS06500 (LLKF_1286) - 1336533..1337674 (+) 1142 Protein_1285 IS3 family transposase -
  LLKF_RS06505 (LLKF_1287) - 1337727..1338326 (-) 600 WP_012897836.1 CYTH domain-containing protein -
  LLKF_RS06510 (LLKF_1288) - 1338367..1339152 (-) 786 WP_012897837.1 ABC transporter permease -
  LLKF_RS06515 (LLKF_1289) - 1339155..1339973 (-) 819 WP_012897838.1 ABC transporter permease -
  LLKF_RS06520 (LLKF_1290) - 1339966..1340964 (-) 999 WP_012897839.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25982.85 Da        Isoelectric Point: 7.2022

>NTDB_id=32080 LLKF_RS06490 WP_268746235.1 1335753..1336463(-) (recA) [Lactococcus lactis subsp. lactis KF147]
MAPAENSLDIEYAENLGVKAESLIFAQPDTGEEAFYMINEFVKTGAFDLIVVDSVAALTPASEIDGVSIPGQQAKMMSEQ
LSKLVSKVNQTKTVIIFINQVRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTTLHTVKNKVSAP
YKKPSVINVFGDGFSQEIDVVTLAIQMGVVKKMNEWYSFNGQKLGRGIFSVKEYLASHQSIFETLKNITRESLQFY

Nucleotide


Download         Length: 711 bp        

>NTDB_id=32080 LLKF_RS06490 WP_268746235.1 1335753..1336463(-) (recA) [Lactococcus lactis subsp. lactis KF147]
ATAGCTCCAGCTGAAAACTCACTTGATATTGAGTACGCTGAAAATCTAGGGGTAAAAGCCGAAAGCCTTATCTTTGCACA
ACCAGATACAGGCGAAGAAGCCTTTTACATGATTAACGAGTTTGTCAAAACAGGAGCCTTTGATTTAATAGTTGTGGATT
CGGTTGCTGCTCTAACACCTGCTTCAGAGATAGATGGAGTCAGTATTCCAGGTCAGCAAGCTAAAATGATGTCAGAACAG
CTCTCTAAGCTCGTTTCAAAAGTAAACCAAACAAAGACGGTCATTATCTTCATCAATCAAGTGCGTTCAACCATGAGTGG
ACTATTCTTAAATAAAGAAACCACCCCAGGAGGGTCAGCCTTAAAATTCTATTCCTCTGTACGGATTGAAGTTAAATCAG
GAGAAAAAATCAAAGATGGCATTGACACTATCGGTAAAAAAACCACACTACATACCGTTAAAAACAAGGTGTCAGCTCCA
TATAAAAAACCGTCTGTCATTAATGTCTTTGGCGATGGTTTCTCTCAAGAAATAGATGTGGTCACGTTAGCGATTCAAAT
GGGAGTAGTTAAGAAAATGAATGAATGGTATTCGTTTAATGGTCAAAAGCTTGGTCGTGGAATCTTTAGTGTTAAGGAGT
ATCTAGCAAGTCATCAATCTATATTTGAAACACTTAAAAATATAACTAGAGAATCTCTTCAATTTTATTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(4-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus thermophilus LMD-9

44.872

99.153

0.445
  recA Streptococcus thermophilus LMG 18311

44.872

99.153

0.445
  recA Streptococcus mitis NCTC 12261

43.933

100

0.445
  recA Streptococcus mitis SK321

43.515

100

0.441
  recA Streptococcus mutans UA159

44.444

99.153

0.441
  recA Streptococcus pyogenes NZ131

44.444

99.153

0.441
  recA Bacillus subtilis subsp. subtilis str. 168

44.589

97.881

0.436
  recA Staphylococcus aureus strain ATCC 12600

44.206

98.729

0.436
  recA Lactococcus lactis subsp. cremoris KW2

44.017

99.153

0.436
  recA Streptococcus pneumoniae Rx1

43.59

99.153

0.432
  recA Streptococcus pneumoniae D39

43.59

99.153

0.432
  recA Streptococcus pneumoniae R6

43.59

99.153

0.432
  recA Streptococcus pneumoniae R36A

43.59

99.153

0.432
  recA Streptococcus pneumoniae TIGR4

43.59

99.153

0.432
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

41.423

100

0.419
  recA Vibrio cholerae strain A1552

42.489

98.729

0.419
  recA Vibrio cholerae O1 biovar El Tor strain E7946

42.489

98.729

0.419
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.982

96.61

0.415
  recA Latilactobacillus sakei subsp. sakei 23K

42.92

95.763

0.411
  recA Acinetobacter baylyi ADP1

41.202

98.729

0.407
  recA Ralstonia pseudosolanacearum GMI1000

41.202

98.729

0.407
  recA Acinetobacter baumannii D1279779

41.202

98.729

0.407
  recA Acinetobacter nosocomialis M2

40.773

98.729

0.403
  recA Glaesserella parasuis strain SC1401

40.773

98.729

0.403
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.889

99.153

0.386
  recA Neisseria gonorrhoeae strain FA1090

40

95.339

0.381
  recA Neisseria gonorrhoeae MS11

40

95.339

0.381
  recA Helicobacter pylori 26695

38.034

99.153

0.377
  recA Helicobacter pylori strain NCTC11637

38.034

99.153

0.377
  recA Pseudomonas stutzeri DSM 10701

37.339

98.729

0.369

Multiple sequence alignment