Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SK637_RS08490 Genome accession   NZ_CP028415
Coordinates   1704484..1705620 (-) Length   378 a.a.
NCBI ID   WP_033689411.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1699484..1710620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS08465 (SK637_01655) rcrP 1699800..1701569 (-) 1770 WP_033689407.1 ABC transporter ATP-binding protein Regulator
  SK637_RS08470 (SK637_01656) - 1701553..1702014 (-) 462 WP_033689409.1 MarR family winged helix-turn-helix transcriptional regulator -
  SK637_RS08480 (SK637_01657) - 1702187..1702903 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SK637_RS08485 (SK637_01658) - 1702999..1704369 (-) 1371 WP_033689410.1 MATE family efflux transporter -
  SK637_RS08490 (SK637_01659) recA 1704484..1705620 (-) 1137 WP_033689411.1 recombinase RecA Machinery gene
  SK637_RS08495 (SK637_01660) cinA 1705704..1706960 (-) 1257 WP_033689412.1 competence/damage-inducible protein A Machinery gene
  SK637_RS08500 (SK637_01661) brpA 1707038..1708093 (-) 1056 WP_033689413.1 biofilm formation/cell division transcriptional regulator BrpA -
  SK637_RS08505 (SK637_01662) - 1708101..1708619 (-) 519 WP_033689414.1 GNAT family N-acetyltransferase -
  SK637_RS08510 (SK637_01663) tsaE 1708609..1709052 (-) 444 WP_033689415.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SK637_RS08515 (SK637_01664) comM 1709148..1709780 (-) 633 WP_237397628.1 competence protein Regulator
  SK637_RS08520 (SK637_01665) ndk 1709911..1710333 (-) 423 WP_033689660.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40539.96 Da        Isoelectric Point: 4.6105

>NTDB_id=284729 SK637_RS08490 WP_033689411.1 1704484..1705620(-) (recA) [Streptococcus mitis strain SK637]
MSKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVAL
HAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDG
DIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQ
KDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLADNP
EVFDEIDHQVRVQFGLIDGEEASAEGVETKKEEATQVDSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=284729 SK637_RS08490 WP_033689411.1 1704484..1705620(-) (recA) [Streptococcus mitis strain SK637]
ATTTCAAAAAAATTTGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCTTAAATTGATTGAGAAAGACTTTGGTAAAGG
ATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGAGTTCAGGTTCTTTGGCTCTTGACATTGCCC
TTGGTTCAGGTGGTTATCCTAAGGGACGTATCATTGAAATCTATGGGCCAGAGTCATCTGGTAAGACAACGGTTGCCCTT
CATGCAGTTGCGCAAGCACAAAAAGAAGGTGGTATTGCAGCCTTTATCGATGCGGAACATGCCCTCGATCCAGCTTATGC
TGCGGCCCTTGGGGTCAACATTGATGAGTTGCTCTTGTCTCAACCAGACTCAGGAGAGCAAGGTCTTGAGATTGCAGGAA
AATTGATTGACTCAGGTGCTGTAGATCTTGTCGTAGTCGACTCAGTTGCGGCCCTTGTACCTCGTGCGGAAATTGATGGA
GATATCGGTGATAGTCACGTTGGCTTGCAGGCTCGTATGATGAGCCAGGCTATGCGTAAACTTGGTGCTTCTATCAATAA
AACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGGTCATGTTTGGAAATCCAGAAACAACTCCTG
GTGGACGTGCTCTGAAATTCTACGCATCAGTCCGTTTGGATGTTCGTGGAAGCACACAAATCAAGGGAACTGGTGACCAA
AAAGATACCAATGTTGGTAAGGAAACCAAGATTAAGGTCGTGAAAAATAAGGTGGCTCCACCATTTAAGGAAGCCTTCGT
TGAAATCATGTATGGAGAAGGGATTTCTAAGACTGGTGAGCTTTTGAAGATCGCAAGCGATTTGGACATCATCAAAAAAG
CAGGAGCTTGGTACTCTTACAAGGATGAGAAAATCGGGCAAGGTTCTGAAAATGCTAAGAAATACTTGGCAGATAACCCA
GAAGTCTTTGATGAGATTGACCATCAAGTCCGTGTTCAATTTGGTTTGATTGATGGAGAAGAAGCTTCTGCAGAAGGTGT
TGAAACTAAAAAAGAAGAAGCAACTCAAGTAGACTCTGTGAATGAAGAAGTAACTCTTGACCTAGGCGATGAGCTTGAAA
TCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

97.09

100

0.971
  recA Streptococcus mitis SK321

97.09

100

0.971
  recA Streptococcus pneumoniae Rx1

93.651

100

0.937
  recA Streptococcus pneumoniae D39

93.651

100

0.937
  recA Streptococcus pneumoniae R6

93.651

100

0.937
  recA Streptococcus pneumoniae TIGR4

93.651

100

0.937
  recA Streptococcus mutans UA159

84.8

99.206

0.841
  recA Streptococcus pyogenes NZ131

91.045

88.624

0.807
  recA Lactococcus lactis subsp. cremoris KW2

79.36

91.005

0.722
  recA Latilactobacillus sakei subsp. sakei 23K

69.789

87.566

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

87.302

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

85.45

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

86.772

0.54
  recA Acinetobacter baylyi ADP1

59.302

91.005

0.54
  recA Glaesserella parasuis strain SC1401

62.037

85.714

0.532
  recA Acinetobacter baumannii D1279779

61.656

86.243

0.532
  recA Neisseria gonorrhoeae MS11

59.467

89.418

0.532
  recA Neisseria gonorrhoeae MS11

59.467

89.418

0.532
  recA Neisseria gonorrhoeae strain FA1090

59.467

89.418

0.532
  recA Vibrio cholerae strain A1552

61.92

85.45

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

85.45

0.529
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

87.037

0.511
  recA Pseudomonas stutzeri DSM 10701

58.589

86.243

0.505
  recA Helicobacter pylori strain NCTC11637

57.751

87.037

0.503
  recA Helicobacter pylori 26695

57.751

87.037

0.503
  recA Ralstonia pseudosolanacearum GMI1000

59.621

83.862

0.5

Multiple sequence alignment