Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   SK637_RS08515 Genome accession   NZ_CP028415
Coordinates   1709148..1709780 (-) Length   210 a.a.
NCBI ID   WP_237397628.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1704148..1714780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS08490 (SK637_01659) recA 1704484..1705620 (-) 1137 WP_033689411.1 recombinase RecA Machinery gene
  SK637_RS08495 (SK637_01660) cinA 1705704..1706960 (-) 1257 WP_033689412.1 competence/damage-inducible protein A Machinery gene
  SK637_RS08500 (SK637_01661) brpA 1707038..1708093 (-) 1056 WP_033689413.1 biofilm formation/cell division transcriptional regulator BrpA -
  SK637_RS08505 (SK637_01662) - 1708101..1708619 (-) 519 WP_033689414.1 GNAT family N-acetyltransferase -
  SK637_RS08510 (SK637_01663) tsaE 1708609..1709052 (-) 444 WP_033689415.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SK637_RS08515 (SK637_01664) comM 1709148..1709780 (-) 633 WP_237397628.1 competence protein Regulator
  SK637_RS08520 (SK637_01665) ndk 1709911..1710333 (-) 423 WP_033689660.1 nucleoside-diphosphate kinase -
  SK637_RS08525 (SK637_01666) rpoC 1710594..1714271 (-) 3678 WP_033686295.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24063.26 Da        Isoelectric Point: 9.2987

>NTDB_id=284731 SK637_RS08515 WP_237397628.1 1709148..1709780(-) (comM) [Streptococcus mitis strain SK637]
MMEKMKKQIRILLLLTVFGISSCSCLSLSTWALMLNQNCFYYLVGMLLLASIGAGINYYSGQRNQSYSVFKEDKQQFLYS
LLLLVNILGLALIVIEHILAGNTSVEGFVEAFLPSFFFLFGIDLLVFLPIQKYVNGLKKILGKKEMCFISGLAILVFLRN
PWMLLSMTFYITLGMLFLGLLVPKVIRWEVSFYSHLMRDILLVVFLLFLF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=284731 SK637_RS08515 WP_237397628.1 1709148..1709780(-) (comM) [Streptococcus mitis strain SK637]
ATGATGGAAAAAATGAAAAAGCAAATTCGTATTTTGTTATTGCTGACAGTTTTTGGTATTAGTAGCTGTTCTTGTTTAAG
TTTATCGACTTGGGCCTTGATGTTAAATCAAAACTGCTTCTATTATTTAGTTGGCATGTTGCTCCTTGCCAGTATTGGGG
CAGGGATAAACTACTATAGTGGACAGCGAAATCAATCTTATTCAGTTTTTAAGGAAGACAAGCAACAATTCTTGTATAGT
CTGTTGCTCTTAGTAAATATTTTGGGTTTAGCTTTAATTGTCATAGAACATATCCTTGCAGGAAATACATCTGTAGAAGG
GTTTGTGGAAGCCTTTCTACCGAGTTTCTTTTTCTTATTTGGTATTGATTTGCTAGTCTTTTTACCGATTCAGAAGTATG
TAAATGGATTGAAAAAGATTTTGGGAAAGAAGGAGATGTGTTTTATTAGTGGACTAGCTATTCTAGTCTTTCTCAGAAAT
CCTTGGATGCTATTATCTATGACATTTTATATTACCTTAGGAATGCTATTTCTAGGACTGTTGGTGCCAAAAGTCATTCG
CTGGGAAGTTTCATTTTACAGCCATTTGATGAGAGATATCTTGTTAGTTGTCTTCTTGCTGTTTCTATTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus mitis SK321

95.477

94.762

0.905
  comM Streptococcus mitis NCTC 12261

94.5

95.238

0.9
  comM Streptococcus pneumoniae D39

40

97.619

0.39
  comM Streptococcus pneumoniae R6

40

97.619

0.39
  comM Streptococcus pneumoniae TIGR4

40

97.619

0.39

Multiple sequence alignment