Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SK637_RS08495 Genome accession   NZ_CP028415
Coordinates   1705704..1706960 (-) Length   418 a.a.
NCBI ID   WP_033689412.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700704..1711960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS08470 (SK637_01656) - 1701553..1702014 (-) 462 WP_033689409.1 MarR family winged helix-turn-helix transcriptional regulator -
  SK637_RS08480 (SK637_01657) - 1702187..1702903 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SK637_RS08485 (SK637_01658) - 1702999..1704369 (-) 1371 WP_033689410.1 MATE family efflux transporter -
  SK637_RS08490 (SK637_01659) recA 1704484..1705620 (-) 1137 WP_033689411.1 recombinase RecA Machinery gene
  SK637_RS08495 (SK637_01660) cinA 1705704..1706960 (-) 1257 WP_033689412.1 competence/damage-inducible protein A Machinery gene
  SK637_RS08500 (SK637_01661) brpA 1707038..1708093 (-) 1056 WP_033689413.1 biofilm formation/cell division transcriptional regulator BrpA -
  SK637_RS08505 (SK637_01662) - 1708101..1708619 (-) 519 WP_033689414.1 GNAT family N-acetyltransferase -
  SK637_RS08510 (SK637_01663) tsaE 1708609..1709052 (-) 444 WP_033689415.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SK637_RS08515 (SK637_01664) comM 1709148..1709780 (-) 633 WP_237397628.1 competence protein Regulator
  SK637_RS08520 (SK637_01665) ndk 1709911..1710333 (-) 423 WP_033689660.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45118.26 Da        Isoelectric Point: 4.3907

>NTDB_id=284730 SK637_RS08495 WP_033689412.1 1705704..1706960(-) (cinA) [Streptococcus mitis strain SK637]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEVRLLSLLEIASQRSSLVILTGGLGPTEDDLTKQT
LAKFLGKELVFDPQAQEKLDVFFAQRPDYARTPNNERQAQIVDGATPLPNETGLAVGGILEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDNQTDPTLAPYAKTGEVTLRLSTKASSQEEANQALDILENQI
LDYQTFEGLSLRDLCYGYGEETSLASIVVEELKRQGKTITAAESLTAGLFQASVADFSGASSIFKGGFVTYSLEEKSKML
DIPVKDLEEQGVVSEFTAQKMAEQARSKTQSDFGLSLTGVAGPDSLEGHPAGTVFIGLAQENETEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=284730 SK637_RS08495 WP_033689412.1 1705704..1706960(-) (cinA) [Streptococcus mitis strain SK637]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAATACCAATGCCCAGTTTTTATCAGA
AAAACTAGCTGAGATTGGGGTAGACGTATATTTTCAGACGGCTGTAGGAGATAATGAAGTTCGTCTCTTGTCTTTGCTTG
AGATTGCCAGTCAACGTAGTAGTCTGGTGATTTTGACAGGTGGTTTGGGACCGACTGAGGACGATTTGACCAAACAAACT
CTGGCTAAATTTTTAGGGAAAGAATTAGTCTTCGATCCTCAGGCGCAGGAGAAGTTGGATGTCTTTTTTGCTCAGAGACC
AGACTATGCCCGAACACCGAATAACGAAAGACAAGCTCAAATTGTAGATGGAGCAACTCCACTGCCGAATGAAACAGGAC
TGGCTGTGGGAGGAATATTGGAAGTCGATGGAGTGACCTACGTTGTCCTTCCAGGTCCACCAAGTGAATTAAAACCCATG
GTCTTAAACCAACTTCTACCCAAGTTGATGACAGGGAGCAAGCTGTATTCCCGAGTTCTTCGTTTCTTTGGAATTGGAGA
AAGTCAGCTGGTTACGATTTTGGCTGATTTGATTGATAATCAAACAGATCCAACCTTAGCACCTTATGCCAAGACAGGAG
AGGTAACCTTGCGTCTATCAACAAAGGCTAGCAGTCAAGAAGAGGCGAATCAAGCGCTGGATATCTTAGAAAACCAAATC
TTGGATTATCAAACCTTTGAAGGACTTTCTTTACGAGACCTTTGTTATGGCTATGGGGAAGAAACTAGTTTAGCCAGCAT
TGTTGTAGAAGAACTAAAAAGGCAAGGGAAAACCATCACGGCTGCAGAGAGTTTGACGGCAGGGCTTTTCCAAGCCAGCG
TAGCTGATTTTTCGGGTGCTTCAAGTATATTCAAGGGTGGTTTTGTAACCTATAGCTTGGAGGAAAAATCAAAGATGTTG
GATATTCCTGTCAAGGATTTGGAAGAACAGGGTGTGGTGTCTGAATTTACAGCACAGAAGATGGCTGAGCAGGCACGAAG
CAAGACCCAGTCTGATTTTGGCCTTAGTTTGACTGGAGTGGCAGGACCAGATAGCCTAGAAGGACATCCAGCTGGGACAG
TCTTCATAGGCTTGGCTCAAGAGAATGAAACTGAAGTCATAAAGGTTAATATTGGAGGCAGAAGTCGAGCAGATGTACGT
CACATTGCTGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

96.89

100

0.969
  cinA Streptococcus mitis NCTC 12261

96.651

100

0.967
  cinA Streptococcus pneumoniae TIGR4

94.258

100

0.943
  cinA Streptococcus pneumoniae Rx1

94.019

100

0.94
  cinA Streptococcus pneumoniae R6

94.019

100

0.94
  cinA Streptococcus pneumoniae D39

93.78

100

0.938
  cinA Streptococcus mutans UA159

72.01

100

0.72
  cinA Streptococcus suis isolate S10

54.808

99.522

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.455

Multiple sequence alignment