Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SK637_RS08465 Genome accession   NZ_CP028415
Coordinates   1699800..1701569 (-) Length   589 a.a.
NCBI ID   WP_033689407.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1694800..1706569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS08435 (SK637_01649) - 1695397..1695762 (-) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  SK637_RS08440 (SK637_01650) rpmB 1695918..1696106 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  SK637_RS08445 (SK637_01651) - 1696212..1696886 (-) 675 WP_033689404.1 LiaF transmembrane domain-containing protein -
  SK637_RS08450 (SK637_01652) - 1696891..1697337 (-) 447 WP_033684350.1 LytTR family DNA-binding domain-containing protein -
  SK637_RS08455 (SK637_01653) - 1697451..1697954 (-) 504 WP_033689405.1 phosphatase PAP2 family protein -
  SK637_RS08460 (SK637_01654) rcrQ 1698050..1699810 (-) 1761 WP_033689406.1 ABC transporter ATP-binding protein Regulator
  SK637_RS08465 (SK637_01655) rcrP 1699800..1701569 (-) 1770 WP_033689407.1 ABC transporter ATP-binding protein Regulator
  SK637_RS08470 (SK637_01656) - 1701553..1702014 (-) 462 WP_033689409.1 MarR family winged helix-turn-helix transcriptional regulator -
  SK637_RS08480 (SK637_01657) - 1702187..1702903 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SK637_RS08485 (SK637_01658) - 1702999..1704369 (-) 1371 WP_033689410.1 MATE family efflux transporter -
  SK637_RS08490 (SK637_01659) recA 1704484..1705620 (-) 1137 WP_033689411.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65394.87 Da        Isoelectric Point: 6.1086

>NTDB_id=284728 SK637_RS08465 WP_033689407.1 1699800..1701569(-) (rcrP) [Streptococcus mitis strain SK637]
MKKLAKRISSKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPAGMMVGMSFFAFLSAVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQSLTDKLNSITRESLTGIRVVRAYNAEEYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAPIARLPLFSDMIVFMSYAMQVVMGFLLMGALFIVLPRTMISAKRINQVLDLH
SSIQKPAQVQLADENLKGQVEFKDVTFRYAANSEAVIEHVSFRAEAGQTVAFIGSTGSGKSTLVNLIPRFYDVSAGEILV
DGVNVQDYALEDLRNKVGYIPQKAVLFSGDVKDNLDFGQSQETPLSEQAMWQALELAQSKNFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=284728 SK637_RS08465 WP_033689407.1 1699800..1701569(-) (rcrP) [Streptococcus mitis strain SK637]
ATGAAGAAATTAGCTAAACGAATTAGTAGCAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACCTGCTTTTCAGT
CTACCTAGAGTTGGAAGTTCCGACCTATATCTCGAAAATTACGGATTTGCTAGGAAGTCAAGGAACCAACTTGGATGAGT
TATGGCAACCAGCAGGTATGATGGTCGGAATGTCCTTTTTTGCCTTCTTGTCCGCAGTTGCAGTTGGATTTTTTGCATCC
AGAGTGGCTGCTTCCTATACTAGTAGGCTGAGAAGTGATATTTTTAATCGAGTTTTGGATTACTCGCAGACAGAGATTAA
GAAATTCTCTATTCCCAGTCTCTTGACGCGTACTACCAATGACATTACTCAAGTTCAAATGTTGATTACCATGGGCTTGC
AAGTGGTAACGCGTGGTCCGATTATGGCTATCTGGGCTATCGGGAAGATTTTAGGCCATTCAGAATACTGGCTCTGGGCC
GTTCTTGTAGCAGTGATTGTCAATGTTTTGATGACGACAGTCTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
AAGTCTGACTGATAAACTGAACAGTATCACTCGTGAGAGTTTAACAGGTATTCGTGTTGTTCGCGCCTACAATGCTGAAG
AATACCAAAATGAAAAATTTGCAGCAGCAAATGATGAATTGACACGCTTGAACTTGTTTGTCAACCGTCTTATGGCTATT
TTGAACCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAACGACGC
TGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGTTTTCATGTCTTATGCTATGCAGGTTGTCATGGGCTTCC
TTCTTATGGGGGCGCTCTTCATCGTTCTTCCTCGCACCATGATCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCAT
TCTTCTATCCAAAAACCTGCTCAAGTGCAGCTGGCTGATGAAAACCTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCAGTTATCGAGCATGTTAGCTTTAGAGCAGAAGCGGGTCAAACAGTGGCCTTTATTG
GGTCAACGGGTTCAGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTATGACGTATCAGCAGGAGAAATTCTGGTG
GACGGTGTCAATGTTCAAGACTATGCTCTAGAAGATTTGCGCAACAAGGTTGGTTATATTCCACAAAAAGCTGTTCTCTT
TTCAGGTGATGTCAAAGACAATCTAGACTTTGGACAAAGTCAAGAAACACCACTTAGTGAACAAGCTATGTGGCAAGCCT
TAGAATTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGCTTGGCGTCAGAAGTAGCCCAAGGAGGAACTAAC
TTCTCAGGTGGACAAAGACAGCGTCTGGCCATTGCGCGTGCCTTGGCTCGGAAGCCAGAAATTCTCATCTTTGATGACTC
CTTCTCAGCCTTGGACTACAAGACAGACCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACAAAATCTATGACCAAGCTTA
TCGTCGCACAGCGTATTTCAACGATTATGGATGCAGATTTGATTTTGGTCTTGGATCAAGGTAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTAGCTAATAACGAAGTTTATCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.389

100

0.677

Multiple sequence alignment