Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SK637_RS08460 Genome accession   NZ_CP028415
Coordinates   1698050..1699810 (-) Length   586 a.a.
NCBI ID   WP_033689406.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1693050..1704810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS08430 (SK637_01648) - 1693727..1695394 (-) 1668 WP_033689403.1 DAK2 domain-containing protein -
  SK637_RS08435 (SK637_01649) - 1695397..1695762 (-) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  SK637_RS08440 (SK637_01650) rpmB 1695918..1696106 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  SK637_RS08445 (SK637_01651) - 1696212..1696886 (-) 675 WP_033689404.1 LiaF transmembrane domain-containing protein -
  SK637_RS08450 (SK637_01652) - 1696891..1697337 (-) 447 WP_033684350.1 LytTR family DNA-binding domain-containing protein -
  SK637_RS08455 (SK637_01653) - 1697451..1697954 (-) 504 WP_033689405.1 phosphatase PAP2 family protein -
  SK637_RS08460 (SK637_01654) rcrQ 1698050..1699810 (-) 1761 WP_033689406.1 ABC transporter ATP-binding protein Regulator
  SK637_RS08465 (SK637_01655) rcrP 1699800..1701569 (-) 1770 WP_033689407.1 ABC transporter ATP-binding protein Regulator
  SK637_RS08470 (SK637_01656) - 1701553..1702014 (-) 462 WP_033689409.1 MarR family winged helix-turn-helix transcriptional regulator -
  SK637_RS08480 (SK637_01657) - 1702187..1702903 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SK637_RS08485 (SK637_01658) - 1702999..1704369 (-) 1371 WP_033689410.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64784.57 Da        Isoelectric Point: 4.9762

>NTDB_id=284727 SK637_RS08460 WP_033689406.1 1698050..1699810(-) (rcrQ) [Streptococcus mitis strain SK637]
MENKKMSLWKQSKPYLAGLQFALLIAFLATILSNIITVYGPTRIKEMTNIIASGLGTSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAIAEKINRLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSTLLVVAVLVTM
FGMNWILALVTVVSTLIGFAFVSVFMGKSQSFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFATLNHRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGISSLQQASAAMGRVFE
FLVEEEMEDESHKERQLSDMKGQVVFERVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEFDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKGISDEHVIEASKAVGIHHFIMTLPDGYDTILDDIVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=284727 SK637_RS08460 WP_033689406.1 1698050..1699810(-) (rcrQ) [Streptococcus mitis strain SK637]
ATGGAAAATAAAAAAATGTCTCTATGGAAACAGAGTAAACCCTATCTTGCAGGTCTCCAGTTTGCCCTTCTGATCGCCTT
TCTAGCAACAATCTTATCCAATATCATTACTGTATATGGTCCAACTCGTATCAAGGAAATGACCAATATTATTGCTAGTG
GTCTGGGAACAAGTGTGGATGTCGCTGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTTATATATGTAATCGGGCTTCTA
TCAAATTATTTGCAGGCCTTTCTGTTTACAACAGCCATTCAACGTTTTTCAGAACGTTTGAGAAGAGCGATTGCAGAGAA
AATTAATCGTCTTCCATTGGGGTATTTTGATGGACATTCTCAAGGGGATACCTTATCTCGTGTGACCAATGACGTTGACA
CGGCAGCCCAGTCTCTCAATCAAAGTCTGGGAACAGTTCTTTCATCCACTTTACTGGTCGTGGCAGTCTTGGTGACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTGTCAACTCTTATCGGTTTTGCTTTCGTGTCTGTCTTTATGGG
CAAATCTCAGAGCTTCTTTAAGAGTCAGCAACAGGATTTGGCAGCTGTCAATGGCTATGTAGAGGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCTATCGAGAGCACGAAAGAAGAATTTGCAACATTAAACCATCGTCTATATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCCTAGTGAT
TATCGTTGGTGCAGCCTTGGCCTTGAATGGGCAGATTAGTATTGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCTCTTTCACAAATCGCTCAAGGGATTAGCAGTCTTCAGCAGGCTAGCGCAGCCATGGGGCGTGTCTTCGAA
TTCTTAGTTGAAGAGGAGATGGAAGATGAATCCCATAAAGAAAGACAATTGAGCGATATGAAAGGTCAAGTAGTCTTTGA
ACGAGTTTCCTTTGGTTACACACCAGAGCGAACTATTATCCATGACTTTTCTGCGACAGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACCGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGTTTGATAAGGGAAGT
ATCCGCATTGATGGTGTAGATACCAAGGAGATGAAGCGTTCGGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGCACTATCCGAGATAATCTCATCTATAACCAAAAGGGTATTAGTGATGAGCATGTGATTGAAGCCA
GCAAGGCTGTGGGGATTCACCACTTTATCATGACCCTACCAGATGGTTATGATACCATCTTGGACGATATAGTGACCTTG
TCTGTCGGGCAAAAACAACTCTTGACCATTGCTCGTGCTTTGCTGAAAGATGCACCACTCTTGATTTTGGATGAGGCGAC
TTCTTCTGTTGATACCCGTACAGAGGAATTGATTCAGAAAGCCATGGATCGTTTGATGGAGGGCAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACCATCCGTAATGCTGATCTTATTCTGGTTATGAAAGATGGAAATATCATTGAGCAAGGAAAT
CATGATGAGCTGATGGCGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAGTTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.267

99.659

0.66

Multiple sequence alignment