Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NMCC_RS07110 Genome accession   NC_010120
Coordinates   1371175..1372221 (-) Length   348 a.a.
NCBI ID   WP_002243709.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1366175..1377221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS07095 (NMCC_1354) dnaX 1367805..1369925 (+) 2121 WP_012221810.1 DNA polymerase III subunit gamma/tau -
  NMCC_RS07100 (NMCC_1355) - 1370005..1370340 (+) 336 WP_012221811.1 YbaB/EbfC family nucleoid-associated protein -
  NMCC_RS07110 (NMCC_1356) recA 1371175..1372221 (-) 1047 WP_002243709.1 recombinase RecA Machinery gene
  NMCC_RS07115 (NMCC_1357) aroD 1372475..1373239 (+) 765 WP_002224578.1 type I 3-dehydroquinate dehydratase -
  NMCC_RS07120 (NMCC_1358) rep 1373259..1375274 (+) 2016 WP_017629277.1 DNA helicase Rep -
  NMCC_RS07125 (NMCC_1359) dinB 1375342..1376400 (-) 1059 WP_002221144.1 DNA polymerase IV -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37638.96 Da        Isoelectric Point: 4.9076

>NTDB_id=27464 NMCC_RS07110 WP_002243709.1 1371175..1372221(-) (recA) [Neisseria meningitidis 053442]
MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAV
AQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGN
ETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEID
AKIRALNGVEMHITEGKLDETDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=27464 NMCC_RS07110 WP_002243709.1 1371175..1372221(-) (recA) [Neisseria meningitidis 053442]
ATGTCAGACGACAAAAGCAAAGCACTTGCCGCCGCACTGGCGCAAATCGAAAAAAGTTTCGGCAAAGGCGCCATCATGAA
AATGGACGGCAGCCAGCAGGAAGAAAACCTCGAAGTCATTTCCACCGGATCGCTCGGATTAGACCTCGCCCTCGGAGTCG
GCGGTCTGCCGCGCGGGCGCATCGTCGAAATCTTCGGCCCAGAATCCTCCGGCAAAACCACCCTCTGCCTCGAAGCCGTC
GCCCAATGCCAGAAAAACGGCGGCGTGTGCGCCTTTGTCGATGCCGAACACGCCTTCGATCCCGTTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAGCTTTACCTGTCCCAGCCCGATACCGGCGAACAGGCTTTGGAAATCTGCGACACACTCGTCC
GTTCGGGCGGCATAGATATGGTAGTCGTCGATTCCGTAGCCGCACTCGTCCCCAAAGCCGAAATCGAAGGCGATATGGGG
GACAGCCATGTCGGACTGCAGGCGCGCCTGATGAGCCAGGCTTTGCGCAAACTGACCGGACACATCAAAAAAACCAACAC
GCTGGTTGTGTTCATCAACCAAATCCGGATGAAGATCGGCGTAATGTTCGGCAGCCCCGAGACCACGACCGGCGGTAACG
CGCTGAAATTCTATTCTTCCGTCCGCCTCGACATCCGCCGCACCGGATCCATCAAAAAAGGTGAAGAAGTATTGGGCAAC
GAAACCCGCGTCAAAGTCATCAAAAACAAAGTCGCGCCGCCGTTCCGTCAGGCAGAGTTTGACATCCTCTACGGAGAAGG
CATCAGTTGGGAAGGCGAATTGATCGACATCGGCGTGAAAAACGACATCATCAACAAATCCGGCGCGTGGTACAGCTACA
ACGGCGCGAAAATCGGTCAGGGCAAAGACAACGTCCGCGTCTGGCTGAAGGAAAATCCCGAAATTGCCGACGAAATCGAC
GCAAAAATTCGCGCCCTCAACGGCGTAGAAATGCACATCACCGAAGGAAAATTGGACGAAACCGACGGCGAACGCCCAGA
AGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

99.138

100

0.991

  recA Neisseria gonorrhoeae strain FA1090

99.138

100

0.991

  recA Ralstonia pseudosolanacearum GMI1000

74.772

94.54

0.707

  recA Vibrio cholerae strain A1552

67.232

100

0.684

  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.232

100

0.684

  recA Pseudomonas stutzeri DSM 10701

71.692

93.391

0.67

  recA Glaesserella parasuis strain SC1401

71.739

92.529

0.664

  recA Acinetobacter baylyi ADP1

69.753

93.103

0.649

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.396

97.989

0.641

  recA Acinetobacter nosocomialis M2

68.827

93.103

0.641

  recA Acinetobacter baumannii D1279779

68.519

93.103

0.638

  recA Staphylococcus aureus strain ATCC 12600

64.62

98.276

0.635

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

94.253

0.635

  recA Helicobacter pylori 26695

67.385

93.391

0.629

  recA Helicobacter pylori strain NCTC11637

67.077

93.391

0.626

  recA Bacillus subtilis subsp. subtilis str. 168

65.138

93.966

0.612

  recA Streptococcus mutans UA159

60.684

100

0.612

  recA Streptococcus pneumoniae R36A

59.829

100

0.603

  recA Streptococcus pneumoniae Rx1

59.829

100

0.603

  recA Streptococcus pneumoniae D39

59.829

100

0.603

  recA Streptococcus pneumoniae R6

59.829

100

0.603

  recA Streptococcus pneumoniae TIGR4

59.829

100

0.603

  recA Latilactobacillus sakei subsp. sakei 23K

60.933

98.563

0.601

  recA Streptococcus mitis NCTC 12261

60.174

98.851

0.595

  recA Streptococcus thermophilus LMG 18311

59.884

98.851

0.592

  recA Streptococcus pyogenes NZ131

61.963

93.678

0.58

  recA Streptococcus thermophilus LMD-9

61.027

95.115

0.58

  recA Streptococcus mitis SK321

60.606

94.828

0.575

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.121

95.115

0.572

  recA Lactococcus lactis subsp. cremoris KW2

60.303

94.828

0.572


Multiple sequence alignment