Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VIBHAR_RS16440 Genome accession   NC_009783
Coordinates   3560849..3561892 (-) Length   347 a.a.
NCBI ID   WP_005425359.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3555849..3566892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS16425 (VIBHAR_03510) - 3556045..3557232 (-) 1188 WP_012128901.1 aspartate kinase -
  VIBHAR_RS16430 (VIBHAR_03511) alaS 3557435..3560032 (-) 2598 WP_012128902.1 alanine--tRNA ligase -
  VIBHAR_RS16435 (VIBHAR_03512) recX 3560175..3560642 (-) 468 WP_012128903.1 recombination regulator RecX -
  VIBHAR_RS16440 (VIBHAR_03513) recA 3560849..3561892 (-) 1044 WP_005425359.1 recombinase RecA Machinery gene
  VIBHAR_RS16445 (VIBHAR_03514) pncC 3562093..3562575 (-) 483 WP_012128905.1 nicotinamide-nucleotide amidase -
  VIBHAR_RS16450 (VIBHAR_03515) mutS 3562661..3565222 (+) 2562 WP_012128906.1 DNA mismatch repair protein MutS -
  VIBHAR_RS16455 (VIBHAR_03516) - 3565288..3566610 (-) 1323 WP_041853460.1 IS4 family transposase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37428.87 Da        Isoelectric Point: 4.9743

>NTDB_id=27013 VIBHAR_RS16440 WP_005425359.1 3560849..3561892(-) (recA) [Vibrio campbellii ATCC BAA-1116]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLRENPEIGKTIDA
KLREMLLSPALPEAPESGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=27013 VIBHAR_RS16440 WP_005425359.1 3560849..3561892(-) (recA) [Vibrio campbellii ATCC BAA-1116]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTTATTGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATTGATGCAGAGCACGCGCTAGACCCTGTATACGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAGCCAGACACAGGTGAGCAAGCGCTAGAAATCTGTGACGCACTTGCACGTT
CTGGTGCTATTGACGTTATGGTTGTCGACTCTGTTGCTGCACTAACACCAAAAGCAGAAATCGAGGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCGATGCGTAAGCTAACGGGTAACTTAAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACAACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTAGTAGGTAACGAA
ACACGCATCAAAGTTGTTAAGAACAAGATTGCAGCACCGTTTAAAGAAGCGAACACGCAAATCATGTACGGCCAAGGTTT
TAACCGCGAAGGCGAACTGATTGACCTAGGTGTGAAGCACAAGCTAGTTGAAAAAGCGGGTGCATGGTACAGCTACCAAG
GTGACAAGATCGGCCAAGGTAAAGCAAACGCTTGTAACTACCTACGCGAAAACCCAGAAATCGGTAAGACTATCGATGCT
AAACTGCGTGAAATGCTACTTTCACCAGCACTACCTGAAGCACCAGAATCGGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.441

94.813

0.905
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.441

94.813

0.905
  recA Acinetobacter baylyi ADP1

72.832

99.712

0.726
  recA Pseudomonas stutzeri DSM 10701

75.841

94.236

0.715
  recA Acinetobacter baumannii D1279779

75

94.524

0.709
  recA Acinetobacter nosocomialis M2

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

70.859

93.948

0.666
  recA Neisseria gonorrhoeae MS11

69.018

93.948

0.648
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.948

0.648
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Staphylococcus aureus strain ATCC 12600

63.401

100

0.634
  recA Helicobacter pylori strain NCTC11637

60.882

97.983

0.597
  recA Helicobacter pylori 26695

60.588

97.983

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.931

0.585
  recA Streptococcus pneumoniae TIGR4

62.539

93.084

0.582
  recA Streptococcus pneumoniae R36A

62.539

93.084

0.582
  recA Streptococcus pneumoniae Rx1

62.539

93.084

0.582
  recA Streptococcus pneumoniae D39

62.539

93.084

0.582
  recA Streptococcus pneumoniae R6

62.539

93.084

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus mitis NCTC 12261

62.229

93.084

0.579
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.389

0.571
  recA Streptococcus thermophilus LMD-9

60.923

93.66

0.571
  recA Streptococcus thermophilus LMG 18311

60.923

93.66

0.571
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

91.354

0.568
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.062

93.084

0.559

Multiple sequence alignment