Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   APL_RS05985 Genome accession   NC_009053
Coordinates   1318766..1319896 (-) Length   376 a.a.
NCBI ID   WP_005598042.1    Uniprot ID   A0ABM6X324
Organism   Actinobacillus pleuropneumoniae serovar 5b str. L20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1313766..1324896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APL_RS05930 (APL_1138) - 1314969..1315220 (-) 252 WP_005601617.1 accessory factor UbiK family protein -
  APL_RS05960 (APL_1139) aroE 1316031..1316855 (-) 825 WP_005601621.1 shikimate dehydrogenase -
  APL_RS05965 (APL_1140) - 1316862..1317416 (-) 555 WP_011848536.1 Sua5/YciO/YrdC/YwlC family protein -
  APL_RS05970 - 1317409..1317942 (-) 534 WP_042655096.1 type I DNA topoisomerase -
  APL_RS05975 (APL_1141) yqfB 1317939..1318247 (-) 309 WP_005608348.1 N(4)-acetylcytidine aminohydrolase -
  APL_RS05980 (APL_1142) recX 1318240..1318695 (-) 456 WP_005601625.1 recombination regulator RecX -
  APL_RS05985 (APL_1143) recA 1318766..1319896 (-) 1131 WP_005598042.1 recombinase RecA Machinery gene
  APL_RS05990 (APL_1144) - 1320010..1320615 (-) 606 WP_042655097.1 aminotransferase class IV family protein -
  APL_RS05995 (APL_1145) - 1320593..1321561 (-) 969 WP_009874769.1 aminodeoxychorismate synthase component I -
  APL_RS06000 (APL_1146) rmuC 1321696..1323330 (+) 1635 WP_009874770.1 DNA recombination protein RmuC -
  APL_RS06005 (APL_1147) - 1323302..1323898 (+) 597 WP_005608357.1 anthranilate synthase component II -
  APL_RS06010 (APL_1148) - 1324003..1324452 (+) 450 WP_005608359.1 DUF302 domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40544.17 Da        Isoelectric Point: 4.5846

>NTDB_id=26390 APL_RS05985 WP_005598042.1 1318766..1319896(-) (recA) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
MAADNKKAQKNTVTKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGSIGLDAALGIGGLPMGRIVEI
YGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRSGVVKDGDEVVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGTKIGQGKNN
AIKWLKENPEIAEKIEQDIREQLISTPEKTSAGEQNVLDADDVNDFEDEAFNEEEL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=26390 APL_RS05985 WP_005598042.1 1318766..1319896(-) (recA) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
ATGGCAGCGGATAACAAAAAAGCGCAAAAGAACACAGTAACAAAACAAATCGATCCGGAACAAAAAGAAAAAGCATTAGC
TGCTGCTCTTGCCCAAATTGAAAAACAATTTGGTAAAGGTTCTATTATGCGCTTAGGCGACACGCAAGCGCTTGATATTG
AAGCGGTTTCAACCGGTTCAATCGGTTTAGACGCCGCATTAGGTATCGGTGGCTTACCGATGGGACGTATCGTTGAGATC
TATGGGCCGGAATCTTCAGGTAAAACGACGCTGACTTTATCGGTCATTGCGCAAGCACAAAAATCAGGTAAAACTTGTGC
GTTTATTGATGCGGAACACGCGCTTGATCCGGTTTATGCACGTAAATTAGGCGTGGATACCGATGCATTGTTAATTTCAC
AACCGGATAACGGTGAACAAGCGCTCGAGATTTGTGATGCGTTGGTTCGTTCCGGTGCGGTTGATGTAATTATTGTGGAC
TCGGTTGCTGCATTAACGCCGAAAGCGGAAATTGAAGGCGATATGGGCGATTCTCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCGTTACGTAAATTAACGGCAAACATTAAGGCGACTAACTGCTTAGTGGTGTTTATCAACCAAATTCGTATGA
AGATCGGTGTGATGTTCGGTAACCCTGAAACAACAACCGGCGGTAACGCACTTAAATTCTACGCTTCGGTTCGTTTAGAT
ATTCGTCGTTCAGGTGTAGTAAAAGACGGAGATGAAGTGGTCGGTAGCGAAACGAAAGTGAAAATTGTGAAAAATAAAGT
TGCGCCGCCGTTCCGTGAAGTTCAATTCGACATTATGTATGGTGAAGGTATTTCACGTATGAATGAACTATTAATTCTTG
CCGAAGCGAATGGCTTTATCCAAAAAGCGGGTGCATGGTTCTCATACGAAGGTACGAAAATCGGTCAAGGTAAAAATAAT
GCAATTAAATGGTTAAAAGAAAATCCGGAGATTGCAGAGAAAATTGAACAAGATATTCGTGAGCAACTTATTTCAACACC
GGAAAAAACATCGGCAGGTGAACAAAATGTGCTAGATGCCGATGATGTGAATGACTTTGAAGACGAAGCGTTTAACGAAG
AAGAACTATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

83.777

100

0.838
  recA Pseudomonas stutzeri DSM 10701

72.093

91.489

0.66
  recA Acinetobacter nosocomialis M2

75.535

86.968

0.657
  recA Vibrio cholerae strain A1552

71.512

91.489

0.654
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.512

91.489

0.654
  recA Acinetobacter baumannii D1279779

75.229

86.968

0.654
  recA Acinetobacter baylyi ADP1

72.836

89.096

0.649
  recA Neisseria gonorrhoeae MS11

71.429

85.638

0.612
  recA Neisseria gonorrhoeae strain FA1090

71.429

85.638

0.612
  recA Ralstonia pseudosolanacearum GMI1000

71.429

83.777

0.598
  recA Streptococcus mutans UA159

57.254

100

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.455

87.766

0.574
  recA Streptococcus mitis SK321

58.583

97.606

0.572
  recA Streptococcus mitis NCTC 12261

58.583

97.606

0.572
  recA Streptococcus pneumoniae R6

59.167

95.745

0.566
  recA Streptococcus pneumoniae D39

59.167

95.745

0.566
  recA Streptococcus pneumoniae R36A

59.167

95.745

0.566
  recA Streptococcus pneumoniae Rx1

59.167

95.745

0.566
  recA Streptococcus pneumoniae TIGR4

59.167

95.745

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

86.436

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.677

88.83

0.548
  recA Streptococcus thermophilus LMD-9

59.884

91.489

0.548
  recA Streptococcus thermophilus LMG 18311

59.884

91.489

0.548
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

85.372

0.543
  recA Streptococcus pyogenes NZ131

59.412

90.426

0.537
  recA Helicobacter pylori strain NCTC11637

61.212

87.766

0.537
  recA Helicobacter pylori 26695

60.909

87.766

0.535
  recA Staphylococcus aureus strain ATCC 12600

62.112

85.638

0.532
  recA Lactococcus lactis subsp. cremoris KW2

57.018

90.957

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

57.944

85.372

0.495