Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SSP_RS11915 Genome accession   NC_007350
Coordinates   2438862..2439374 (-) Length   170 a.a.
NCBI ID   WP_002484307.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2433862..2444374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSP_RS11870 (SSP2359) - 2434158..2434772 (-) 615 WP_011303954.1 FMN-binding negative transcriptional regulator -
  SSP_RS11875 (SSP2360) - 2434814..2435149 (-) 336 WP_011303955.1 hypothetical protein -
  SSP_RS11880 (SSP2361) - 2435253..2435597 (-) 345 WP_011303956.1 DUF4260 domain-containing protein -
  SSP_RS11885 (SSP2363) - 2436191..2436604 (+) 414 WP_011303958.1 YxeA family protein -
  SSP_RS11890 (SSP2364) - 2436748..2437020 (-) 273 WP_011303959.1 hypothetical protein -
  SSP_RS13300 (SSP2366) - 2437444..2437566 (+) 123 WP_011303961.1 hypothetical protein -
  SSP_RS11900 (SSP2368) - 2437840..2438046 (+) 207 WP_011303963.1 hypothetical protein -
  SSP_RS11905 (SSP2369) - 2438071..2438292 (+) 222 WP_011303964.1 hypothetical protein -
  SSP_RS13115 (SSP2370) - 2438307..2438447 (+) 141 WP_011303965.1 hypothetical protein -
  SSP_RS11910 (SSP2371) rpsR 2438570..2438812 (-) 243 WP_002484306.1 30S ribosomal protein S18 -
  SSP_RS11915 (SSP2372) ssbA 2438862..2439374 (-) 513 WP_002484307.1 single-stranded DNA-binding protein Machinery gene
  SSP_RS11920 (SSP2373) rpsF 2439393..2439698 (-) 306 WP_011303966.1 30S ribosomal protein S6 -
  SSP_RS11925 (SSP2374) - 2440120..2440926 (+) 807 WP_011303967.1 GH25 family lysozyme -
  SSP_RS11935 (SSP2375) ychF 2441089..2442186 (-) 1098 WP_011303968.1 redox-regulated ATPase YchF -
  SSP_RS11940 (SSP2376) - 2442186..2442401 (-) 216 WP_002484311.1 DUF951 domain-containing protein -
  SSP_RS11945 (SSP2377) - 2442430..2443308 (-) 879 WP_011303969.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18948.48 Da        Isoelectric Point: 4.9163

>NTDB_id=24619 SSP_RS11915 WP_002484307.1 2438862..2439374(-) (ssbA) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=24619 SSP_RS11915 WP_002484307.1 2438862..2439374(-) (ssbA) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT
CATCTTATCAAAGTAATAACAACAATAACTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.953

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

57.225

100

0.582
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.706

0.382

Multiple sequence alignment