Detailed information NTG0024544

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: VF_RS02725
• Genome accession: NC_006840
• Coordinates: 577375..578421 (+)
• Length: 348 a.a.
• NCBI ID: WP_005417772.1
• Uniprot ID: Q5E7G6
• Organism: Aliivibrio fischeri ES114
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 572375..583421

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VF_RS02715 (VF0534)	mutS	574065..576629 (-)	2565	WP_011261298.1	DNA mismatch repair protein MutS	-
VF_RS02720 (VF_2591)	-	576737..577234 (+)	498	WP_011261299.1	CinA family protein	-
VF_RS02725 (VF0535)	recA	577375..578421 (+)	1047	WP_005417772.1	recombinase RecA	Machinery gene
VF_RS02730 (VF0536)	alaS	578664..581243 (+)	2580	WP_011261300.1	alanine--tRNA ligase	-
VF_RS02735 (VF0537)	-	581256..582425 (+)	1170	WP_011261301.1	aspartate kinase	-
VF_RS02740 (VF0538)	csrA	582507..582704 (+)	198	WP_005417777.1	carbon storage regulator CsrA	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 37587.01 Da
• Isoelectric Point: 4.9096

>NTDB_id=24544 VF_RS02725 WP_005417772.1 577375..578421(+) (recA) [Aliivibrio fischeri ES114]
MDDNKKKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVDKAGAWYSYNGDKIGQGKANASKFMRENTEVAAELDK
KLREMLLTPAEEKPETDAAPEIEENEEF

Nucleotide

• Length: 1047 bp

>NTDB_id=24544 VF_RS02725 WP_005417772.1 577375..578421(+) (recA) [Aliivibrio fischeri ES114]
ATGGACGATAACAAGAAAAAAGCACTGGCCGCCGCATTAGGTCAAATTGAAAAACAATTTGGTAAAGGTTCAATCATGAA
GTTGGGCGATAACCGCACAATGGATGTTGAAACTGTGTCTACTGGTTCTTTATCTCTTGATATTGCTCTAGGTGCTGGTG
GTTTACCAATGGGTCGTATCGTTGAGATTTTTGGCCCTGAGAGTTCAGGTAAAACAACACTGACTCTAGAATTAATTGCA
GCTGCGCAACGTGAAGGTAAAACATGTGCCTTTATTGATGCTGAACATGCTCTAGATCCTGTATACGCTAAAAAACTTGG
CGTTAATATTGATGAATTATTAGTTTCTCAGCCAGATACGGGTGAGCAAGCTTTAGAAATCTGTGATGCGTTAGCACGTT
CTGGTGCTGTTGATGTAATGGTAATTGACTCCGTTGCAGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAATTAACGGGTAACCTAAAGCAGTCAAACTGTAT
GGCTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTAATGTTTGGTAACCCTGAAACAACAACTGGTGGTAATGCAC
TTAAGTTCTATGCATCTGTTCGTCTTGACATTCGTCGTACTGGCGCAGTAAAAGATGGCGATGAAGTTGTTGGTAACGAA
ACTCGTATCAAAGTCGTTAAGAATAAAATTGCAGCACCATTTAAACAAGCTGAAACTCAAATCATGTACGGCCAAGGTTT
TAACCGTGAAGGTGAGTTAATTGACTTAGGTGTTAAACATAAGTTGGTTGATAAAGCGGGCGCATGGTACAGCTACAATG
GTGATAAGATTGGTCAAGGTAAAGCGAACGCATCGAAATTCATGCGTGAAAATACTGAAGTAGCAGCAGAACTAGATAAG
AAGCTACGTGAGATGCTATTGACTCCAGCAGAAGAAAAGCCAGAGACTGATGCTGCTCCTGAAATTGAAGAAAACGAAGA
GTTTTAA

Domains

Predicted by InterProScan.

• recA bacterial DNA recombination protein (RecA_N) (7-267)

3D structure

• AlphaFold DB: Q5E7G6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	92.401	94.54	0.874
recA	Vibrio cholerae O1 biovar El Tor strain E7946	92.401	94.54	0.874
recA	Pseudomonas stutzeri DSM 10701	71.221	98.851	0.704
recA	Acinetobacter baumannii D1279779	70.605	99.713	0.704
recA	Acinetobacter nosocomialis M2	70.317	99.713	0.701
recA	Acinetobacter baylyi ADP1	69.628	100	0.698
recA	Glaesserella parasuis strain SC1401	72.222	93.103	0.672
recA	Ralstonia pseudosolanacearum GMI1000	68.732	97.414	0.67
recA	Neisseria gonorrhoeae MS11	65.994	99.713	0.658
recA	Neisseria gonorrhoeae strain FA1090	65.994	99.713	0.658
recA	Staphylococcus aureus strain ATCC 12600	62.536	99.713	0.624
recA	Streptococcus mitis NCTC 12261	58.689	100	0.592
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.272	93.103	0.589
recA	Streptococcus pneumoniae R6	60.355	97.126	0.586
recA	Streptococcus pneumoniae TIGR4	60.355	97.126	0.586
recA	Streptococcus pneumoniae R36A	60.355	97.126	0.586
recA	Streptococcus pneumoniae Rx1	60.355	97.126	0.586
recA	Streptococcus pneumoniae D39	60.355	97.126	0.586
recA	Bacillus subtilis subsp. subtilis str. 168	63.551	92.241	0.586
recA	Streptococcus mitis SK321	60.237	96.839	0.583
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.027	95.115	0.58
recA	Helicobacter pylori strain NCTC11637	58.58	97.126	0.569
recA	Latilactobacillus sakei subsp. sakei 23K	58.58	97.126	0.569
recA	Streptococcus mutans UA159	60.923	93.391	0.569
recA	Helicobacter pylori 26695	58.284	97.126	0.566
recA	Streptococcus thermophilus LMG 18311	60.615	93.391	0.566
recA	Streptococcus thermophilus LMD-9	60.615	93.391	0.566
recA	Streptococcus pyogenes NZ131	60.615	93.391	0.566
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.755	91.667	0.566
recA	Lactococcus lactis subsp. cremoris KW2	60.372	92.816	0.56