Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   TRNA_RS40155 Genome accession   NC_006270
Coordinates   3610812..3611501 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3605812..3616501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS40120 (BL03368) - 3605986..3606462 (-) 477 WP_003185711.1 flagellar protein FlgN -
  TRNA_RS40125 (BL03367) flgM 3606481..3606747 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  TRNA_RS40130 (BL03366) - 3606827..3607246 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  TRNA_RS40135 (BL03365) comFC 3607305..3608039 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  TRNA_RS40140 (BL03364) - 3607996..3608280 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  TRNA_RS40145 (BL03363) comFA 3608335..3609729 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  TRNA_RS40150 (BL03362) - 3609850..3610692 (-) 843 WP_003185726.1 DegV family protein -
  TRNA_RS40155 (BL03361) degU 3610812..3611501 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  TRNA_RS40160 (BL03360) degS 3611583..3612740 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator
  TRNA_RS40165 (BL03593) - 3612954..3613592 (+) 639 WP_011198353.1 YigZ family protein -
  TRNA_RS40170 (BL03592) - 3613607..3614683 (+) 1077 WP_003185737.1 LCP family protein -
  TRNA_RS40175 (BL03359) - 3614768..3615142 (-) 375 WP_003185738.1 YunG family protein -
  TRNA_RS40180 (BL03358) - 3615262..3616326 (-) 1065 WP_003185739.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=23600 TRNA_RS40155 WP_003185730.1 3610812..3611501(-) (degU) [Bacillus licheniformis DSM 13 = ATCC 14580]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=23600 TRNA_RS40155 WP_003185730.1 3610812..3611501(-) (degU) [Bacillus licheniformis DSM 13 = ATCC 14580]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTTA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGGGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment