Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CEG11_RS01760 Genome accession   NZ_CP021976
Coordinates   324220..324657 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain T20E-257     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 319220..329657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG11_RS19800 - 319803..319930 (-) 128 Protein_298 hypothetical protein -
  CEG11_RS01730 (CEG11_01730) - 320078..321280 (+) 1203 WP_003156595.1 GTP-binding protein -
  CEG11_RS01735 (CEG11_01735) - 321345..322481 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  CEG11_RS01740 (CEG11_01740) - 322496..322930 (+) 435 WP_003156592.1 RDD family protein -
  CEG11_RS01745 (CEG11_01745) - 323047..323322 (+) 276 WP_375140154.1 YckD family protein -
  CEG11_RS19555 - 323426..323542 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  CEG11_RS01750 (CEG11_01750) - 323541..323759 (+) 219 Protein_304 family 1 glycosylhydrolase -
  CEG11_RS01755 (CEG11_01755) nin/comJ 323800..324198 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  CEG11_RS01760 (CEG11_01760) nucA/comI 324220..324657 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CEG11_RS01765 (CEG11_01765) hxlB 325016..325573 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  CEG11_RS01770 (CEG11_01770) hxlA 325570..326205 (-) 636 WP_003156586.1 3-hexulose-6-phosphate synthase -
  CEG11_RS01775 (CEG11_01775) - 326437..326799 (+) 363 WP_003156585.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=235469 CEG11_RS01760 WP_003156588.1 324220..324657(-) (nucA/comI) [Bacillus velezensis strain T20E-257]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=235469 CEG11_RS01760 WP_003156588.1 324220..324657(-) (nucA/comI) [Bacillus velezensis strain T20E-257]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment