Detailed information NTG0023399

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: VP_RS12415
• Genome accession: NC_004603
• Coordinates: 2693309..2694352 (-)
• Length: 347 a.a.
• NCBI ID: WP_005478550.1
• Uniprot ID: Q87LR1
• Organism: Vibrio parahaemolyticus RIMD 2210633
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2688309..2699352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VP_RS12395 (VP2546)	csrA	2688313..2688510 (-)	198	WP_004415691.1	carbon storage regulator CsrA	-
VP_RS12400 (VP2547)	-	2688603..2689790 (-)	1188	WP_005478552.1	aspartate kinase	-
VP_RS12405 (VP2548)	alaS	2689993..2692575 (-)	2583	WP_005455546.1	alanine--tRNA ligase	-
VP_RS12410 (VP2549)	recX	2692718..2693185 (-)	468	WP_005455548.1	recombination regulator RecX	-
VP_RS12415 (VP2550)	recA	2693309..2694352 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
VP_RS12420 (VP2551)	pncC	2694553..2695035 (-)	483	WP_005478554.1	nicotinamide-nucleotide amidase	-
VP_RS12425 (VP2552)	mutS	2695120..2697681 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
VP_RS12430 (VP2553)	rpoS	2697760..2698769 (-)	1010	Protein_2400	RNA polymerase sigma factor RpoS	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37432.91 Da
• Isoelectric Point: 5.1850

>NTDB_id=23399 VP_RS12415 WP_005478550.1 2693309..2694352(-) (recA) [Vibrio parahaemolyticus RIMD 2210633]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF

Nucleotide

• Length: 1044 bp

>NTDB_id=23399 VP_RS12415 WP_005478550.1 2693309..2694352(-) (recA) [Vibrio parahaemolyticus RIMD 2210633]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTCGAGCTTATCGCT
GCTGCACAACGTGAAGGTAAAACTTGTGCGTTTATCGATGCTGAGCACGCGTTGGATCCTGTGTACGCTAAAAAGCTTGG
TGTTGATATCGATGCGCTATTGGTATCTCAGCCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCCATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTCCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAAACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterProScan.

• recA bacterial DNA recombination protein (RecA_N) (7-267)

3D structure

• AlphaFold DB: Q87LR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	91.643	100	0.916
recA	Vibrio cholerae O1 biovar El Tor strain E7946	91.643	100	0.916
recA	Pseudomonas stutzeri DSM 10701	72.941	97.983	0.715
recA	Acinetobacter baylyi ADP1	72.303	98.847	0.715
recA	Acinetobacter baumannii D1279779	74.695	94.524	0.706
recA	Acinetobacter nosocomialis M2	74.39	94.524	0.703
recA	Glaesserella parasuis strain SC1401	70.859	93.948	0.666
recA	Neisseria gonorrhoeae MS11	65.903	100	0.663
recA	Neisseria gonorrhoeae strain FA1090	65.903	100	0.663
recA	Ralstonia pseudosolanacearum GMI1000	71.383	89.625	0.64
recA	Staphylococcus aureus strain ATCC 12600	65.337	93.948	0.614
recA	Helicobacter pylori 26695	60.294	97.983	0.591
recA	Helicobacter pylori strain NCTC11637	62.08	94.236	0.585
recA	Streptococcus pneumoniae R6	62.848	93.084	0.585
recA	Streptococcus pneumoniae TIGR4	62.848	93.084	0.585
recA	Streptococcus pneumoniae R36A	62.848	93.084	0.585
recA	Streptococcus pneumoniae Rx1	62.848	93.084	0.585
recA	Streptococcus pneumoniae D39	62.848	93.084	0.585
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.636	91.931	0.585
recA	Bacillus subtilis subsp. subtilis str. 168	62.617	92.507	0.579
recA	Streptococcus mitis NCTC 12261	61.92	93.084	0.576
recA	Streptococcus thermophilus LMD-9	61.538	93.66	0.576
recA	Streptococcus thermophilus LMG 18311	61.538	93.66	0.576
recA	Streptococcus pyogenes NZ131	61.231	93.66	0.573
recA	Streptococcus mitis SK321	61.61	93.084	0.573
recA	Streptococcus mutans UA159	60.923	93.66	0.571
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	92.507	0.568
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.215	95.389	0.565
recA	Lactococcus lactis subsp. cremoris KW2	60.681	93.084	0.565
recA	Latilactobacillus sakei subsp. sakei 23K	60.748	92.507	0.562