Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CXB69_RS02955 Genome accession   NZ_CP025206
Coordinates   587439..588506 (-) Length   355 a.a.
NCBI ID   WP_011374196.1    Uniprot ID   Q38YD9
Organism   Latilactobacillus sakei strain WiKim0074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 582439..593506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB69_RS02940 (CXB69_02935) - 583551..584216 (+) 666 WP_025016329.1 YigZ family protein -
  CXB69_RS02945 (CXB69_02940) - 584243..585331 (-) 1089 WP_035144637.1 glycosyltransferase family 4 protein -
  CXB69_RS02950 (CXB69_02945) rny 585487..587052 (-) 1566 WP_011374197.1 ribonuclease Y -
  CXB69_RS02955 (CXB69_02950) recA 587439..588506 (-) 1068 WP_011374196.1 recombinase RecA Machinery gene
  CXB69_RS02960 (CXB69_02955) pgsA 588689..589273 (-) 585 WP_011374195.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CXB69_RS02965 (CXB69_02960) - 589299..590222 (-) 924 WP_011374194.1 helix-turn-helix domain-containing protein -
  CXB69_RS02970 (CXB69_02965) ymfI 590304..591035 (-) 732 WP_076632202.1 elongation factor P 5-aminopentanone reductase -
  CXB69_RS02975 (CXB69_02970) yfmH 591035..592339 (-) 1305 WP_100970129.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38254.25 Da        Isoelectric Point: 4.6316

>NTDB_id=217476 CXB69_RS02955 WP_011374196.1 587439..588506(-) (recA) [Latilactobacillus sakei strain WiKim0074]
MAKDERQAALDAALKKIEKNFGKGSIMRMGEKVDTQVSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYSTVRLEVRRAETIKNGTDMIGN
RARIKVVKNKVAPPFKVAEVDIMYGQGISRTGELVDMAVEKDIINKSGSWYSYGSERIGQGRENAKNYLADHEDVEDEVR
LKVRAAYGISDVPEEDLPTTEDEQINILPDDSTEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=217476 CXB69_RS02955 WP_011374196.1 587439..588506(-) (recA) [Latilactobacillus sakei strain WiKim0074]
TTGGCTAAAGATGAAAGACAAGCAGCACTTGATGCTGCCCTAAAGAAGATTGAAAAGAATTTTGGTAAAGGTTCAATTAT
GCGAATGGGTGAAAAGGTTGATACACAAGTCTCAACAGTTTCATCTGGTTCATTGGCATTGGACGAAGCGCTCGGAGTAG
GTGGTTATCCTCGCGGCCGGATCGTTGAAATTTACGGTCCTGAAAGTTCAGGTAAAACAACCGTTGCGTTACATGCTGTT
GCAGAAGTGCAAAAGCAAGGTGGAACGGCTGCTTATATCGATGCTGAAAATGCGATGGATCCTAAGTATGCAACAGCACT
TGGCGTTAATATTGATGACTTACTCTTGTCACAACCTGATACTGGTGAACAAGGCTTAGAAATTGCTGATGCCTTGGTAT
CAAGTGGGGCCGTTGATATTTTAGTTGTCGATTCAGTTGCCGCTTTGGTACCACGTGCTGAAATCGAAGGTGAAATGGGT
GACGCCCACGTTGGCTTACAAGCGCGTTTGATGTCACAAGCCTTACGTAAATTATCAGGGACGATTAATAAGACGAAGAC
GATTGCGTTATTCATTAACCAAATTCGTGAAAAAGTCGGCGTGATGTTTGGTAACCCCGAAGTCACACCAGGTGGTCGTG
CTTTGAAGTTCTACTCAACTGTTCGGCTTGAAGTGCGTCGTGCTGAAACCATCAAAAATGGGACAGATATGATTGGGAAC
CGGGCCCGAATCAAAGTCGTTAAGAATAAGGTTGCGCCACCATTTAAGGTCGCTGAAGTTGATATCATGTACGGTCAAGG
GATTTCCAGAACCGGTGAATTGGTTGATATGGCGGTCGAAAAAGACATTATCAATAAGAGTGGTTCTTGGTACTCTTATG
GCTCAGAACGAATTGGCCAAGGGCGAGAAAATGCTAAGAACTATTTGGCTGATCACGAAGATGTCGAAGATGAAGTTCGT
TTGAAGGTCAGAGCAGCTTATGGTATTTCAGATGTACCTGAAGAAGATCTCCCAACAACTGAAGATGAACAAATAAATAT
TTTACCAGATGATTCAACAGAAGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

100

100

1
  recA Bacillus subtilis subsp. subtilis str. 168

74.924

92.113

0.69
  recA Streptococcus thermophilus LMD-9

66.575

100

0.679
  recA Staphylococcus aureus strain ATCC 12600

70.206

95.493

0.67
  recA Streptococcus mutans UA159

68.208

97.465

0.665
  recA Streptococcus pyogenes NZ131

71.429

92.676

0.662
  recA Streptococcus pneumoniae R36A

67.919

97.465

0.662
  recA Streptococcus thermophilus LMG 18311

67.919

97.465

0.662
  recA Streptococcus pneumoniae Rx1

67.919

97.465

0.662
  recA Streptococcus pneumoniae D39

67.919

97.465

0.662
  recA Streptococcus pneumoniae R6

67.919

97.465

0.662
  recA Streptococcus pneumoniae TIGR4

67.919

97.465

0.662
  recA Lactococcus lactis subsp. cremoris KW2

70.359

94.085

0.662
  recA Streptococcus mitis SK321

68.222

96.62

0.659
  recA Streptococcus mitis NCTC 12261

69.486

93.239

0.648
  recA Neisseria gonorrhoeae MS11

62.691

92.113

0.577
  recA Neisseria gonorrhoeae strain FA1090

62.691

92.113

0.577
  recA Ralstonia pseudosolanacearum GMI1000

64.013

88.451

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

90.986

0.561
  recA Helicobacter pylori 26695

54.902

100

0.552
  recA Helicobacter pylori strain NCTC11637

54.902

100

0.552
  recA Vibrio cholerae strain A1552

60.748

90.423

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.748

90.423

0.549
  recA Pseudomonas stutzeri DSM 10701

57.227

95.493

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.327

92.113

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.021

92.113

0.544
  recA Acinetobacter baylyi ADP1

59.19

90.423

0.535
  recA Glaesserella parasuis strain SC1401

59.19

90.423

0.535
  recA Acinetobacter baumannii D1279779

58.567

90.423

0.53
  recA Acinetobacter nosocomialis M2

58.255

90.423

0.527

Multiple sequence alignment