Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JHP_RS00760 Genome accession   NC_000921
Coordinates   156402..157445 (+) Length   347 a.a.
NCBI ID   WP_000963113.1    Uniprot ID   Q9ZMS7
Organism   Helicobacter pylori J99     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 151402..162445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHP_RS00725 (jhp0134) - 151461..151679 (+) 219 WP_001876875.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  JHP_RS00730 (jhp0135) ccoP 151681..152559 (+) 879 WP_000346854.1 cytochrome-c oxidase, cbb3-type subunit III -
  JHP_RS00735 (jhp0136) - 152570..152776 (+) 207 WP_000670513.1 DUF4006 family protein -
  JHP_RS00740 (jhp0137) - 152877..153470 (+) 594 WP_000677515.1 hypothetical protein -
  JHP_RS00745 (jhp0138) - 153483..154064 (+) 582 WP_000660335.1 hypothetical protein -
  JHP_RS00750 (jhp0139) - 154676..155443 (+) 768 WP_000506368.1 hypothetical protein -
  JHP_RS00755 (jhp0140) - 155440..156303 (-) 864 WP_000626219.1 menaquinone biosynthesis family protein -
  JHP_RS00760 (jhp0141) recA 156402..157445 (+) 1044 WP_000963113.1 recombinase RecA Machinery gene
  JHP_RS00765 (jhp0142) eno 157457..158737 (+) 1281 WP_000955648.1 phosphopyruvate hydratase -
  JHP_RS00770 (jhp0143) - 158730..159005 (+) 276 WP_000146220.1 hypothetical protein -
  JHP_RS00775 (jhp0144) - 159022..159618 (+) 597 WP_001881045.1 AMIN domain-containing protein -
  JHP_RS00780 (jhp0145) - 159623..160111 (+) 489 WP_001164300.1 shikimate kinase -
  JHP_RS00785 (jhp0146) - 160133..161089 (+) 957 WP_000952319.1 PDC sensor domain-containing protein -
  JHP_RS00790 (jhp0147) - 161086..162219 (-) 1134 WP_000028798.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37623.31 Da        Isoelectric Point: 5.3408

>NTDB_id=20920 JHP_RS00760 WP_000963113.1 156402..157445(+) (recA) [Helicobacter pylori J99]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=20920 JHP_RS00760 WP_000963113.1 156402..157445(+) (recA) [Helicobacter pylori J99]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACGGGCTCGTTAGGGTTGGATTTAGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCACATT
ATCGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCATTCATTGACGCTGAACATGCCCTAGATGTGTATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATTTACTCGTTTCCCAACCAAGCACGGGCGAAGAAGCCTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGACTTATGAGCCATGCGTTAAGGAAAATCACCGGTGTTTTGCATAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGAATGAAGATTGGCATGACGGGCTATGGGAGTCCAGAGACTACAACCGGAG
GCAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGTAATAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGACTATGGCGTGAAATTAGACATCGTGGATAAGAGCGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTATTGAAAGAAGATAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATCGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
GTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ZMS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.847

100

0.988
  recA Helicobacter pylori 26695

98.271

100

0.983
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.049

94.524

0.738
  recA Staphylococcus aureus strain ATCC 12600

62.757

98.271

0.617
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.846

93.66

0.617
  recA Acinetobacter nosocomialis M2

62.281

98.559

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

93.66

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

95.677

0.602
  recA Acinetobacter baumannii D1279779

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

62.997

94.236

0.594
  recA Ralstonia pseudosolanacearum GMI1000

61.012

96.83

0.591
  recA Vibrio cholerae strain A1552

60.417

96.83

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.417

96.83

0.585
  recA Pseudomonas stutzeri DSM 10701

59.357

98.559

0.585
  recA Glaesserella parasuis strain SC1401

59.756

94.524

0.565
  recA Streptococcus pneumoniae R6

55.271

100

0.559
  recA Streptococcus pneumoniae R36A

55.271

100

0.559
  recA Streptococcus pneumoniae Rx1

55.271

100

0.559
  recA Streptococcus pneumoniae D39

55.271

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.271

100

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

54.062

100

0.556
  recA Streptococcus pyogenes NZ131

56.97

95.101

0.542
  recA Lactococcus lactis subsp. cremoris KW2

57.143

94.813

0.542
  recA Streptococcus mitis NCTC 12261

56.839

94.813

0.539
  recA Streptococcus mitis SK321

56.535

94.813

0.536
  recA Streptococcus mutans UA159

55.389

96.254

0.533
  recA Streptococcus thermophilus LMD-9

55.758

95.101

0.53
  recA Streptococcus thermophilus LMG 18311

55.758

95.101

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

93.948

0.522