Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FORC53_RS02665 Genome accession   NZ_CP019290
Coordinates   538088..539134 (+) Length   348 a.a.
NCBI ID   WP_118893271.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 533088..544134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS02650 (FORC53_0467) rpoS 533738..534730 (+) 993 WP_045596855.1 RNA polymerase sigma factor RpoS Regulator
  FORC53_RS02655 (FORC53_0468) mutS 534806..537367 (-) 2562 WP_108678541.1 DNA mismatch repair protein MutS -
  FORC53_RS02660 (FORC53_0469) pncC 537451..537954 (+) 504 WP_011079523.1 nicotinamide-nucleotide amidase -
  FORC53_RS02665 (FORC53_0470) recA 538088..539134 (+) 1047 WP_118893271.1 recombinase RecA Machinery gene
  FORC53_RS02675 (FORC53_0473) - 539479..540328 (+) 850 Protein_458 IS3 family transposase -
  FORC53_RS02680 - 540331..540603 (-) 273 Protein_459 transposase -
  FORC53_RS02685 (FORC53_0474) - 540915..541949 (-) 1035 WP_039542229.1 IS110 family transposase -
  FORC53_RS02690 (FORC53_0475) - 542148..542984 (-) 837 WP_118893274.1 hypothetical protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37508.98 Da        Isoelectric Point: 5.1715

>NTDB_id=179738 FORC53_RS02665 WP_118893271.1 538088..539134(+) (recA) [Vibrio vulnificus strain FORC_053]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLIEKAGAWYSYKGDKIGQGKANACKFISEHHNIAEELDV
KLRELLLTPATEQPAEAINNDVAEDDAF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=179738 FORC53_RS02665 WP_118893271.1 538088..539134(+) (recA) [Vibrio vulnificus strain FORC_053]
ATGGACGAGAACAAACAGAAGGCTCTGGCCGCCGCACTAGGTCAAATTGAAAAGCAGTTCGGTAAAGGTTCAATCATGCG
CCTAGGTGACAACCGTGCGATGGATGTTGAAACCATCTCGACAGGTTCACTATCTCTGGATATTGCGCTGGGTGCGGGTG
GCTTACCAATGGGCCGTATCGTTGAAATTTTTGGTCCAGAATCTTCAGGTAAAACCACGTTGACCCTTGAGCTGATCGCT
GCGGCTCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCTGTGTATGCGAAGAAGCTTGG
CGTTAATATCGACCAGTTGTTGGTATCTCAGCCTGACACCGGTGAACAAGCGTTGGAAATCTGTGATGCTCTTGCTCGCT
CAGGTGCGGTTGACGTTATTGTTGTCGACTCTGTTGCAGCATTGACGCCAAAGGCAGAAATCGAAGGTGAGATGGGCGAC
TCGCACATGGGTCTTCAAGCTCGTATGCTATCTCAAGCGATGCGTAAGTTAACGGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAAACCACAACGGGTGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTCTTGATATTCGCCGTACTGGTGCGATCAAAGAAGGTGATGAGGTCGTGGGTAACGAA
ACGCGTATCAAAGTGGTGAAGAATAAGATCGCTGCACCGTTTAAAGAAGCCAACACTCAAATTATGTACGGCCAAGGCTT
TAACCGCGAAGGTGAGTTAATTGACCTTGGTGTCAAGCACAAATTAATTGAGAAAGCAGGTGCTTGGTACAGTTACAAAG
GCGATAAAATTGGTCAGGGTAAAGCGAATGCCTGTAAGTTCATCTCAGAACACCATAATATTGCTGAAGAGCTTGATGTC
AAACTGCGTGAACTGCTGCTTACTCCTGCGACGGAGCAGCCAGCAGAAGCTATAAATAATGATGTTGCTGAGGATGATGC
ATTTTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

93.994

95.69

0.899
  recA Vibrio cholerae O1 biovar El Tor strain E7946

93.994

95.69

0.899
  recA Pseudomonas stutzeri DSM 10701

71.965

99.425

0.716
  recA Acinetobacter nosocomialis M2

71.676

99.425

0.713
  recA Acinetobacter baumannii D1279779

73.716

95.115

0.701
  recA Acinetobacter baylyi ADP1

72.239

96.264

0.695
  recA Glaesserella parasuis strain SC1401

71.605

93.103

0.667
  recA Neisseria gonorrhoeae MS11

68.098

93.678

0.638
  recA Neisseria gonorrhoeae strain FA1090

68.098

93.678

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.159

90.517

0.635
  recA Staphylococcus aureus strain ATCC 12600

63.804

93.678

0.598
  recA Streptococcus mitis SK321

59.078

99.713

0.589
  recA Streptococcus mitis NCTC 12261

59.078

99.713

0.589
  recA Streptococcus pneumoniae TIGR4

62.848

92.816

0.583
  recA Streptococcus pneumoniae Rx1

62.848

92.816

0.583
  recA Streptococcus pneumoniae D39

62.848

92.816

0.583
  recA Streptococcus pneumoniae R6

62.848

92.816

0.583
  recA Streptococcus pneumoniae R36A

62.848

92.816

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.667

0.583
  recA Helicobacter pylori strain NCTC11637

58.772

98.276

0.578
  recA Helicobacter pylori 26695

58.48

98.276

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.115

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.241

0.575
  recA Streptococcus thermophilus LMG 18311

60.923

93.391

0.569
  recA Streptococcus thermophilus LMD-9

60.923

93.391

0.569
  recA Streptococcus pyogenes NZ131

60.615

93.391

0.566
  recA Streptococcus mutans UA159

60.615

93.391

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

92.241

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.514

91.092

0.56
  recA Lactococcus lactis subsp. cremoris KW2

60.062

92.816

0.557