Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   A2G56_RS05795 Genome accession   NZ_CP014835
Coordinates   1286484..1287410 (-) Length   308 a.a.
NCBI ID   WP_062710251.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1281484..1292410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS05775 - 1281485..1282399 (-) 915 WP_062710238.1 ABC transporter permease -
  A2G56_RS05780 - 1282512..1284173 (-) 1662 WP_062710240.1 peptide ABC transporter substrate-binding protein -
  A2G56_RS05785 amiF 1284476..1285408 (-) 933 WP_062710243.1 ATP-binding cassette domain-containing protein Regulator
  A2G56_RS05790 amiE 1285408..1286475 (-) 1068 WP_062710246.1 ABC transporter ATP-binding protein Regulator
  A2G56_RS05795 amiD 1286484..1287410 (-) 927 WP_062710251.1 oligopeptide ABC transporter permease OppC Regulator
  A2G56_RS05800 amiC 1287410..1288909 (-) 1500 WP_062710254.1 ABC transporter permease Regulator
  A2G56_RS05805 amiA 1288979..1290952 (-) 1974 WP_062710258.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34963.04 Da        Isoelectric Point: 8.5848

>NTDB_id=174476 A2G56_RS05795 WP_062710251.1 1286484..1287410(-) (amiD) [Streptococcus halotolerans strain HTS9]
MAQIDKTKFTFVELDTSAAEVIDSPAYSYWKSVFRQFFAKKSTLIMLVILITIILMSFIYPMFANYDFKDVSNINDFSKR
FIWPNSEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINTVIGVVIGGIWGVSKSFDRIMLEVYNVISNIPFLLIVIV
LSYSIGAGFWNLIFAFCVTGWLGIAYSIRVQVLRYRDLEYNLASRTLGTPMTKMVVRNLLPQLVSVIMTLVSQMLPMYIS
FEAFLSFFGLGLPISEPSLGRLIANYSTYLTDNSYLFWIPLTTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=174476 A2G56_RS05795 WP_062710251.1 1286484..1287410(-) (amiD) [Streptococcus halotolerans strain HTS9]
ATGGCTCAAATCGATAAAACGAAATTTACATTTGTAGAATTAGATACCTCAGCAGCAGAAGTGATCGATTCACCAGCTTA
TTCTTATTGGAAGTCGGTTTTCAGGCAGTTTTTTGCTAAGAAGTCGACCCTTATTATGCTTGTTATTCTGATCACGATTA
TTTTGATGAGTTTCATCTACCCAATGTTTGCCAATTACGATTTTAAAGATGTTAGCAATATCAACGATTTTTCAAAACGT
TTTATTTGGCCAAATAGTGAGTATTGGTTTGGTACAGATAAGAATGGGCAATCATTATTTGATGGTGTTTGGTATGGTGC
TAGAAATTCTATCTTGATTTCAGTGATTGCGACCTTGATTAACACAGTTATCGGTGTGGTTATAGGTGGTATTTGGGGCG
TTTCAAAAAGCTTTGATCGCATTATGCTAGAAGTTTACAATGTTATTTCTAATATCCCCTTCCTCTTGATTGTTATCGTT
CTTTCCTATTCAATTGGTGCTGGTTTTTGGAACCTTATCTTTGCCTTTTGTGTTACAGGATGGTTAGGGATTGCTTACAG
TATCCGTGTTCAAGTGCTACGTTATCGCGATTTAGAGTATAACCTTGCCAGTCGTACCTTGGGAACCCCGATGACTAAGA
TGGTGGTTCGTAACCTCTTGCCGCAATTGGTATCAGTCATCATGACCTTGGTAAGTCAGATGTTACCTATGTATATTTCT
TTTGAGGCATTCTTATCTTTCTTTGGTCTTGGATTACCGATTTCCGAGCCAAGTCTGGGACGTCTTATTGCTAATTATTC
AACCTACTTAACAGATAACTCATACCTTTTTTGGATTCCGCTAACGACTTTGATTTTAGTGTCTTTACCGCTATATATCG
TGGGGCAAAACCTTGCAGATGCTAGTGATCCGCGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

72.403

100

0.724
  amiD Streptococcus thermophilus LMG 18311

70.779

100

0.708
  amiD Streptococcus thermophilus LMD-9

70.779

100

0.708

Multiple sequence alignment