Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RN80_RS03220 Genome accession   NZ_CP012646
Coordinates   614431..615597 (+) Length   388 a.a.
NCBI ID   WP_060627462.1    Uniprot ID   A0A371QED3
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609431..620597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS03190 (RN80_03200) ndk 609738..610160 (+) 423 WP_060628748.1 nucleoside-diphosphate kinase -
  RN80_RS03195 (RN80_03205) comM 610294..610923 (+) 630 WP_060627452.1 hypothetical protein Regulator
  RN80_RS03200 (RN80_03210) tsaE 611020..611463 (+) 444 WP_060627454.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RN80_RS03205 (RN80_03215) - 611453..611971 (+) 519 WP_060627456.1 GNAT family N-acetyltransferase -
  RN80_RS03210 (RN80_03220) brpA 611979..613031 (+) 1053 WP_060627458.1 biofilm formation/cell division transcriptional regulator BrpA -
  RN80_RS03215 (RN80_03225) cinA 613120..614376 (+) 1257 WP_060627460.1 competence/damage-inducible protein A Machinery gene
  RN80_RS03220 (RN80_03230) recA 614431..615597 (+) 1167 WP_060627462.1 recombinase RecA Machinery gene
  RN80_RS03225 (RN80_03235) - 615712..617082 (+) 1371 WP_060627463.1 MATE family efflux transporter -
  RN80_RS03230 (RN80_03240) - 617179..617895 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RN80_RS03235 (RN80_03245) - 618073..618543 (+) 471 WP_060627465.1 MarR family winged helix-turn-helix transcriptional regulator -
  RN80_RS03240 (RN80_03250) rcrP 618518..620287 (+) 1770 WP_060627467.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41675.37 Da        Isoelectric Point: 4.7125

>NTDB_id=156004 RN80_RS03220 WP_060627462.1 614431..615597(+) (recA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADNPEVFDEIDHQVRVQFGLIDGEEASVEGVETKKDEAVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=156004 RN80_RS03220 WP_060627462.1 614431..615597(+) (recA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAGGGTTCAATCATGCGTTTGGGTGAACGTGCTGAGCAAAAGGTGCAAGTGATGA
GCTCCGGTTCCTTGGCTCTTGATATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTACGGACCA
GAGTCATCTGGTAAGACAACGGTTGCTCTTCATGCAGTTGCGCAAGCGCAAAAAGAAGGTGGAATTGCAGCCTTTATCGA
TGCGGAACATGCCCTCGATCCAGCTTATGCTGCGGCCCTTGGTGTCAACATTGACGAATTGCTCTTGTCTCAACCAGATT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGACTCAGGTGCTGTAGATCTTGTCGTGGTCGACTCAGTTGCT
GCCCTTGTACCTCGTGCAGAAATTGATGGAGATATCGGAGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAGCTAGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTACGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTTTACGCATCAGTCCGTTTGGATGTTCGTGGA
AGTACGCAAATCAAGGGAACTGGTGACCAAAAAGACACCAACGTCGGTAAAGAAACTAAGATTAAGGTCGTGAAAAACAA
GGTGGCTCCACCATTTAAGGAAGCCTTCGTGGAAATCATGTACGGAGAAGGGATTTCTAAGACTGGTGAACTTTTGAAGA
TCGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTATTCTTATAAGGATGAGAAAATTGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGATAATCCAGAAGTCTTTGATGAGATTGACCATCAAGTCCGTGTTCAATTTGGTTTGAT
TGATGGAGAGGAAGCTTCTGTAGAAGGTGTTGAAACTAAAAAAGATGAAGCAGTTCAAGCAGATTCTGTGAATGAAGAAG
TAACTCTTGACCTAGGCGATGAGCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A371QED3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

97.423

100

0.974
  recA Streptococcus mitis SK321

97.423

100

0.974
  recA Streptococcus pneumoniae Rx1

94.072

100

0.941
  recA Streptococcus pneumoniae D39

94.072

100

0.941
  recA Streptococcus pneumoniae R6

94.072

100

0.941
  recA Streptococcus pneumoniae TIGR4

94.072

100

0.941
  recA Streptococcus mutans UA159

83.896

99.227

0.832
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.693

90.722

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

66.479

91.495

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.052

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

83.247

0.536
  recA Glaesserella parasuis strain SC1401

60.882

87.629

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

84.536

0.526
  recA Acinetobacter baumannii D1279779

60.534

86.856

0.526
  recA Vibrio cholerae strain A1552

61.92

83.247

0.515
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

83.247

0.515
  recA Acinetobacter baylyi ADP1

61.043

84.021

0.513
  recA Neisseria gonorrhoeae MS11

61.635

81.959

0.505
  recA Neisseria gonorrhoeae MS11

61.635

81.959

0.505
  recA Neisseria gonorrhoeae strain FA1090

61.635

81.959

0.505
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

84.794

0.497
  recA Pseudomonas stutzeri DSM 10701

58.589

84.021

0.492
  recA Helicobacter pylori strain NCTC11637

57.751

84.794

0.49
  recA Helicobacter pylori 26695

57.751

84.794

0.49
  recA Ralstonia pseudosolanacearum GMI1000

59.621

81.701

0.487

Multiple sequence alignment