Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RN80_RS03240 Genome accession   NZ_CP012646
Coordinates   618518..620287 (+) Length   589 a.a.
NCBI ID   WP_060627467.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 613518..625287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS03220 (RN80_03230) recA 614431..615597 (+) 1167 WP_060627462.1 recombinase RecA Machinery gene
  RN80_RS03225 (RN80_03235) - 615712..617082 (+) 1371 WP_060627463.1 MATE family efflux transporter -
  RN80_RS03230 (RN80_03240) - 617179..617895 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RN80_RS03235 (RN80_03245) - 618073..618543 (+) 471 WP_060627465.1 MarR family winged helix-turn-helix transcriptional regulator -
  RN80_RS03240 (RN80_03250) rcrP 618518..620287 (+) 1770 WP_060627467.1 ABC transporter ATP-binding protein Regulator
  RN80_RS03245 (RN80_03255) rcrQ 620277..622037 (+) 1761 WP_060627469.1 ABC transporter ATP-binding protein Regulator
  RN80_RS03250 (RN80_03260) - 622133..622636 (+) 504 WP_060627471.1 phosphatase PAP2 family protein -
  RN80_RS03255 (RN80_03265) - 622750..623196 (+) 447 WP_000776607.1 LytTR family DNA-binding domain-containing protein -
  RN80_RS03260 (RN80_03270) - 623201..623875 (+) 675 WP_060627473.1 LiaF transmembrane domain-containing protein -
  RN80_RS03265 (RN80_03275) rpmB 623982..624170 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  RN80_RS03270 (RN80_03280) - 624326..624691 (+) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65457.89 Da        Isoelectric Point: 7.0689

>NTDB_id=156005 RN80_RS03240 WP_060627467.1 618518..620287(+) (rcrP) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKKLAKRISRKEWGMILLAILFTCFSVYLELEVPTYISKITNLLGSQRTNLDELWQPAGMMVGMSFLAFLSAVAVGFFSS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAPTARLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTMVSAKRINQVLDLH
SSIQNPAQAQLADENLKGQVEFKDVTFRYAANSEAVIEHVSFKAEAGQTVAFIGSTGSGKSTLVNLIPRFYDVSEGEILV
DGVNVQDYDLKDLRNKVGYIPQKAVLFSGDVKGNLDFGHSQETPLSEQAMWQALELAQSKNFIEDKEAGLSSEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=156005 RN80_RS03240 WP_060627467.1 618518..620287(+) (rcrP) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAGAAATTAGCCAAACGAATTAGTAGGAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACCTGCTTTTCGGT
CTATCTAGAGTTAGAAGTGCCGACCTATATCTCGAAAATTACGAATTTACTAGGAAGTCAAAGAACCAACTTGGATGAGT
TATGGCAACCAGCAGGTATGATGGTGGGAATGTCCTTTCTAGCCTTCTTATCCGCAGTTGCAGTTGGATTTTTTTCGTCC
AGAGTGGCCGCTTCTTATACTAGTAGGCTGAGAAGTGATATTTTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAA
GAAATTCTCTATTCCTAGCCTCTTGACGCGTACTACCAATGACATTACTCAAGTTCAAATGTTGATTACCATGGGCTTGC
AAGTAGTTACGCGTGGTCCGATTATGGCTATCTGGGCTATCGGGAAGATTTTAGGCCATTCAGAATACTGGCTCTGGGCC
GTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACTGTTTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
GGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTTAACAGGTATTCGCGTCGTTCGTGCCTACAATGCAGAGG
ATTACCAAAATGAAAAATTTGCAGCAGCAAATGATGAATTGACACGCTTGAATTTGTTTGTCAACCGTCTCATGGCCATT
TTGAATCCTATCATGATGGGAATTTCAAGTGGTTTGAGTGTGGCGATATACTGGATTGGAGCCTATGTAATCAACGATGC
TGCTCCGACGGCGCGCCTGCCTCTCTTTAGTGATATGGTTGTTTTCATGTCTTATGCCATGCAGGTTGTCATGGGCTTCC
TTCTCATGGGGGCGCTCTTCATCGTTCTTCCCCGAACCATGGTCTCTGCCAAGCGGATTAACCAGGTTCTAGATTTACAT
TCTTCTATCCAAAATCCTGCTCAAGCGCAGCTGGCTGATGAAAATCTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCGGTTATCGAGCATGTCAGCTTTAAAGCAGAAGCTGGTCAAACAGTGGCCTTTATTG
GGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGATGTGTCAGAAGGAGAAATTCTGGTG
GATGGTGTCAATGTTCAAGACTATGACTTGAAAGATTTGCGCAACAAGGTTGGTTATATTCCTCAGAAAGCGGTTCTCTT
TTCAGGTGATGTTAAGGGCAATTTGGACTTTGGACACAGTCAAGAAACACCACTTAGTGAACAGGCTATGTGGCAGGCTT
TGGAGTTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGCTTATCGTCAGAAGTGGCCCAAGGAGGAACCAAC
TTCTCAGGTGGTCAAAGACAGCGTCTGGCAATTGCGCGTGCCTTAGCTCGGAAGCCAGAAATCCTCATCTTTGATGACTC
CTTCTCAGCTTTGGACTACAAGACAGACCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACCAAGTCTATGACCAAGCTTA
TCGTTGCACAGCGTATTTCAACGATTATGGATGCAGATTTGATTTTGGTCTTGGATCAAGGAAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTAGCTAATAACGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.389

100

0.677

Multiple sequence alignment