Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RN80_RS03245 Genome accession   NZ_CP012646
Coordinates   620277..622037 (+) Length   586 a.a.
NCBI ID   WP_060627469.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 615277..627037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS03225 (RN80_03235) - 615712..617082 (+) 1371 WP_060627463.1 MATE family efflux transporter -
  RN80_RS03230 (RN80_03240) - 617179..617895 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RN80_RS03235 (RN80_03245) - 618073..618543 (+) 471 WP_060627465.1 MarR family winged helix-turn-helix transcriptional regulator -
  RN80_RS03240 (RN80_03250) rcrP 618518..620287 (+) 1770 WP_060627467.1 ABC transporter ATP-binding protein Regulator
  RN80_RS03245 (RN80_03255) rcrQ 620277..622037 (+) 1761 WP_060627469.1 ABC transporter ATP-binding protein Regulator
  RN80_RS03250 (RN80_03260) - 622133..622636 (+) 504 WP_060627471.1 phosphatase PAP2 family protein -
  RN80_RS03255 (RN80_03265) - 622750..623196 (+) 447 WP_000776607.1 LytTR family DNA-binding domain-containing protein -
  RN80_RS03260 (RN80_03270) - 623201..623875 (+) 675 WP_060627473.1 LiaF transmembrane domain-containing protein -
  RN80_RS03265 (RN80_03275) rpmB 623982..624170 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  RN80_RS03270 (RN80_03280) - 624326..624691 (+) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  RN80_RS03275 (RN80_03285) - 624694..626361 (+) 1668 WP_060627476.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64837.60 Da        Isoelectric Point: 4.8612

>NTDB_id=156006 RN80_RS03245 WP_060627469.1 620277..622037(+) (rcrQ) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MENKKMSLWKQSKPYLAGLQFALLIAFLATILSNIITVYGPTRIKEMTNIIASGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAIAEKINRLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVVAVLVTM
FGMNWILALVTVVSTLIGFAFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNHRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQTCAAMGRVFE
FLGEEEMEDESHKERQLSDMKGQVVFDRVSFGYTPERTIINDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKDISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=156006 RN80_RS03245 WP_060627469.1 620277..622037(+) (rcrQ) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGGAAAATAAGAAAATGTCTCTCTGGAAACAGAGTAAACCCTATCTTGCAGGCCTCCAGTTTGCCCTTCTAATCGCCTT
TCTAGCAACAATCTTATCCAATATCATTACTGTATATGGTCCAACCCGTATCAAGGAAATGACTAATATTATTGCCAGTG
GTTTGGAAACAAGTGTGGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTCATCTATGTGATTGGACTTTTA
TCAAATTATTTGCAGGCCTTTCTGTTTACAACAGCTATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCTATTGCAGAGAA
AATCAATCGCCTTCCATTAGGATATTTTGATGGGCATTCTCAAGGAGATACCTTGTCTCGTGTGACTAATGACGTTGACA
CTGCAGCCCAATCCCTCAATCAAAGTCTAGGAACAGTTCTTTCATCTAGCTTACTGGTCGTGGCTGTCTTAGTAACCATG
TTTGGTATGAACTGGATTTTAGCTTTGGTGACGGTTGTTTCAACTCTTATTGGTTTTGCTTTCGTGTCTGTCTTTATGGG
CAAATCACAGGGATTCTTTAAAAGTCAGCAACAGGATTTGGCAGCTGTCAATGGTTATGTGGAAGAAATGTACTCTGGTC
ATAATGTGGTGACCAGCTACAATGCTATCGAGAGCACGAAAGAAGAGTTTGCGAAATTAAACCATCGTCTGTATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATTGTTGGTGCAGCTTTGGCTCTGAATGGGCAGATTAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCCCTTTCCCAAATTGCTCAAGGGATTACCAGTCTTCAGCAAACTTGCGCAGCCATGGGACGTGTCTTCGAA
TTCTTAGGTGAAGAGGAAATGGAAGATGAATCTCATAAAGAAAGACAGCTGAGCGATATGAAAGGGCAAGTGGTCTTTGA
TCGAGTTTCCTTTGGTTATACACCAGAGCGAACCATCATTAATGACTTTTCTGCGACTGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACCGGAGCTGGGAAGACAACTATTGTCAATCTTTTGATGAAGTTCTATGAGATTGATAAGGGAAGC
ATCCGTATCGATGGTGTGGATACCAAGGAGATGAAGCGTTCGGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGCACTATCCGAGACAATCTTATCTATAACCAAAAGGATATTAGCGATGAGCGCGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCATCACTTTATTATGACCCTCCCAGATGGTTACGATACCGTCTTGGACGATACAGTGACCTTG
TCTGTCGGACAAAAGCAACTCTTGACCATTGCTCGCGCTTTGCTGAAAGATGCACCACTCCTAATCCTAGATGAAGCGAC
CTCTTCGGTTGATACACGGACGGAAGAATTAATCCAGAAAGCCATGGACCGTTTGATGGAGGGAAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCTACTATCCGAAATGCTGATCTTATTCTGGTTATGAAAGATGGAAATATCATCGAGCAAGGAAAT
CATGATGAGCTGATGGCGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.438

99.659

0.662

Multiple sequence alignment