Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   RN80_RS03195 Genome accession   NZ_CP012646
Coordinates   610294..610923 (+) Length   209 a.a.
NCBI ID   WP_060627452.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 605294..615923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS03180 (RN80_03190) rpoC 605800..609477 (+) 3678 WP_060627450.1 DNA-directed RNA polymerase subunit beta' -
  RN80_RS03190 (RN80_03200) ndk 609738..610160 (+) 423 WP_060628748.1 nucleoside-diphosphate kinase -
  RN80_RS03195 (RN80_03205) comM 610294..610923 (+) 630 WP_060627452.1 hypothetical protein Regulator
  RN80_RS03200 (RN80_03210) tsaE 611020..611463 (+) 444 WP_060627454.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RN80_RS03205 (RN80_03215) - 611453..611971 (+) 519 WP_060627456.1 GNAT family N-acetyltransferase -
  RN80_RS03210 (RN80_03220) brpA 611979..613031 (+) 1053 WP_060627458.1 biofilm formation/cell division transcriptional regulator BrpA -
  RN80_RS03215 (RN80_03225) cinA 613120..614376 (+) 1257 WP_060627460.1 competence/damage-inducible protein A Machinery gene
  RN80_RS03220 (RN80_03230) recA 614431..615597 (+) 1167 WP_060627462.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23948.06 Da        Isoelectric Point: 9.2987

>NTDB_id=156002 RN80_RS03195 WP_060627452.1 610294..610923(+) (comM) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MEKMKKQIRVLLLLTFFGLSSCSCLSLSTWALMLNQNCFYYLVGMLLLASIGAGLNYYSGQRNQSYSVFKEDKQQFLYSL
LLLVNILGLALIVIDHILAGNTSVEGFVEAFLPSFFFLFGIDLLVFLPIQKYVNGLKKILGKKEICFISGLAILIFLRNP
WMLLSMTFYITLGMLFLGLLVPKVIRWEVSFYSHLMRDILLVVFLLFLF

Nucleotide


Download         Length: 630 bp        

>NTDB_id=156002 RN80_RS03195 WP_060627452.1 610294..610923(+) (comM) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGGAAAAAATGAAAAAGCAAATTCGTGTTTTGTTATTGCTGACGTTTTTTGGTCTTAGTAGCTGTTCTTGTTTAAGTTT
ATCGACTTGGGCTTTGATGTTAAATCAAAACTGCTTCTATTATTTAGTTGGCATGTTGCTCCTTGCCAGTATTGGTGCAG
GGCTAAACTACTATAGTGGACAGCGAAATCAATCTTATTCAGTTTTTAAGGAAGATAAGCAACAATTCTTGTATAGTCTC
TTGCTCTTAGTAAACATTTTGGGTTTAGCTTTAATTGTCATAGACCATATCCTTGCAGGAAATACATCCGTAGAAGGGTT
TGTGGAAGCCTTTCTACCAAGTTTCTTTTTCTTATTTGGTATTGATTTGTTAGTTTTTCTACCGATTCAGAAGTATGTAA
ATGGATTGAAAAAGATTTTGGGTAAGAAGGAAATCTGTTTTATTAGTGGACTAGCTATTCTAATCTTTCTCAGAAATCCT
TGGATGCTATTATCCATGACGTTTTATATTACCTTGGGAATGCTATTTTTAGGACTGTTGGTGCCAAAAGTCATTCGCTG
GGAAGTTTCGTTTTACAGCCATTTGATGAGAGATATCTTATTAGTTGTCTTCTTACTATTTCTATTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus mitis NCTC 12261

96.172

100

0.962
  comM Streptococcus mitis SK321

96.482

95.215

0.919
  comM Streptococcus pneumoniae D39

39.512

98.086

0.388
  comM Streptococcus pneumoniae R6

39.512

98.086

0.388
  comM Streptococcus pneumoniae TIGR4

39.512

98.086

0.388

Multiple sequence alignment