Detailed information NTG0144667

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: YH61_RS04720
• Genome accession: NZ_CP011330
• Coordinates: 1018324..1019379 (-)
• Length: 351 a.a.
• NCBI ID: WP_000679725.1
• Uniprot ID: Q9ZN27
• Organism: Helicobacter pylori J99
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1013324..1024379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YH61_RS04695 (YH61_04690)	-	1013864..1015276 (-)	1413	WP_000694964.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
YH61_RS04700 (YH61_04695)	comB10	1015346..1016476 (-)	1131	WP_001045766.1	DNA type IV secretion system protein ComB10	Machinery gene
YH61_RS04705 (YH61_04700)	comB9	1016469..1017455 (-)	987	WP_001878684.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
YH61_RS04710 (YH61_04705)	comB8	1017455..1018198 (-)	744	WP_000660577.1	virB8 family protein	Machinery gene
YH61_RS04715 (YH61_04710)	comB7	1018195..1018308 (-)	114	WP_001217877.1	hypothetical protein	Machinery gene
YH61_RS04720 (YH61_04715)	comB6	1018324..1019379 (-)	1056	WP_000679725.1	P-type conjugative transfer protein TrbL	Machinery gene
YH61_RS04725 (YH61_04720)	-	1019387..1020391 (-)	1005	WP_000468465.1	PDZ domain-containing protein	-
YH61_RS04730 (YH61_04725)	-	1020391..1020693 (-)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
YH61_RS04735 (YH61_04730)	panD	1020696..1021049 (-)	354	WP_000142257.1	aspartate 1-decarboxylase	-
YH61_RS04740 (YH61_04735)	-	1021039..1023267 (-)	2229	WP_000357196.1	ATP-dependent Clp protease ATP-binding subunit	-
YH61_RS04745 (YH61_04740)	-	1023267..1023539 (-)	273	WP_000781796.1	ATP-dependent Clp protease adaptor ClpS	-
YH61_RS04750 (YH61_04745)	-	1023541..1023954 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39746.60 Da
• Isoelectric Point: 8.8294

>NTDB_id=144667 YH61_RS04720 WP_000679725.1 1018324..1019379(-) (comB6) [Helicobacter pylori J99]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSAFQSLQHATTSPAPSHISSSASQSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=144667 YH61_RS04720 WP_000679725.1 1018324..1019379(-) (comB6) [Helicobacter pylori J99]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGTGCTAGCGCGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAATCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGCT
TCATTAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCACTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCGTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGTGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTCCAATCTTTACAGCATGCCA
CGACCTCGCCCGCTCCTTCTCATATTTCCTCTTCTGCAAGTCAAAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

3D structure

• AlphaFold DB: Q9ZN27

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	92.023	100	0.92