Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GBS85147_RS06405 Genome accession   NZ_CP010319
Coordinates   1270358..1272175 (-) Length   605 a.a.
NCBI ID   WP_000481824.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS85147     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1265358..1277175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS85147_RS06385 (GBS85147_1297) - 1265963..1267192 (-) 1230 WP_000489523.1 HAMP domain-containing sensor histidine kinase -
  GBS85147_RS06390 (GBS85147_1298) - 1267192..1267878 (-) 687 WP_001264420.1 response regulator transcription factor -
  GBS85147_RS06395 (GBS85147_1299) - 1267880..1268506 (-) 627 WP_000449638.1 GTP pyrophosphokinase family protein -
  GBS85147_RS06400 (GBS85147_1300) rcrQ 1268614..1270368 (-) 1755 WP_000851086.1 ABC transporter ATP-binding protein Regulator
  GBS85147_RS06405 (GBS85147_1301) rcrP 1270358..1272175 (-) 1818 WP_000481824.1 ABC transporter ATP-binding protein Regulator
  GBS85147_RS06410 (GBS85147_1302) - 1272222..1272662 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator -
  GBS85147_RS06415 (GBS85147_1303) - 1272930..1275002 (+) 2073 WP_000726925.1 bifunctional metallophosphatase/5'-nucleotidase -
  GBS85147_RS06420 (GBS85147_1304) - 1275039..1275449 (-) 411 WP_000594937.1 peptide deformylase -
  GBS85147_RS06425 (GBS85147_1305) gdhA 1275519..1276868 (-) 1350 WP_000200443.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67469.34 Da        Isoelectric Point: 8.5556

>NTDB_id=136379 GBS85147_RS06405 WP_000481824.1 1270358..1272175(-) (rcrP) [Streptococcus agalactiae strain GBS85147]
MFNIFKRLNGKEWLMIVASTILVCLAVWMDLKTPEYMSDITRMLQTKGTKVEAIWDPGLKMLAFSFGSFLVAVMVGFLGA
RTAASFTSRLRSDIFNHVMDYSDAEIKRFSIPSLLTRTTNDLTQLQILIVMGMQVVTRGPIMAIWALTKIWGKSDQWTGA
VGVAVIIVMILLSVLLLLAFPRQRQIQGFTDALNATTREALSGVRVIRAYNAEKYQTDKFKRENDDLTKLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGSYLINDISVPKVTGTSVSVLAAKSAITDRVDLFSNMVVFSSYAMQVVMGFMMMVAIFIIM
PRALVSARRINEVLTLAPTVTFKENSHIQSAQKGQIEFQDVSFHYSKDSEAVIEHVSFKADTGQTVAFIGSTGSGKSTLV
NLVPRFYDATEGSIKLDGIDIKKYSHNDLNNKIGYIPQKAVLFSGTVRSNMVFGESGRKELSDEQIWQALELAQAKEFIE
AKEKGLDIEVAQGGSNFSGGQKQRLAIARALARHPEILIFDDSFSALDYKTDHILRHELKEKTAAMTKLIVAQRISTIMD
ADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEELENEN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=136379 GBS85147_RS06405 WP_000481824.1 1270358..1272175(-) (rcrP) [Streptococcus agalactiae strain GBS85147]
ATGTTTAATATTTTCAAGCGACTCAATGGTAAAGAATGGTTGATGATTGTGGCGAGTACTATATTAGTGTGTCTAGCGGT
TTGGATGGACTTAAAGACTCCAGAATATATGTCTGATATTACACGTATGTTGCAAACTAAAGGTACAAAGGTAGAGGCTA
TTTGGGATCCTGGACTAAAAATGCTTGCCTTTTCATTTGGTAGTTTTTTAGTAGCAGTAATGGTAGGTTTTTTAGGTGCT
AGGACAGCAGCTAGTTTTACTAGTCGATTACGTTCAGATATTTTTAACCATGTGATGGATTATTCTGATGCAGAAATTAA
GCGATTTTCTATCCCCTCTCTATTAACGCGCACAACTAACGACTTGACTCAGCTACAGATCCTTATTGTAATGGGAATGC
AGGTTGTTACCCGTGGACCAATTATGGCAATATGGGCTTTGACTAAAATTTGGGGTAAAAGCGATCAATGGACTGGGGCA
GTTGGAGTAGCGGTTATTATCGTTATGATATTACTTAGCGTTCTACTCTTACTCGCTTTTCCGAGACAACGGCAAATCCA
AGGTTTTACAGATGCGCTTAATGCAACTACTAGAGAGGCACTCTCTGGTGTTAGAGTTATTCGTGCCTACAATGCTGAAA
AGTATCAAACAGATAAGTTCAAACGTGAAAATGACGATTTAACAAAATTGAACCTTTTTGTTTATAGATTGATGTCGCTT
ATGAATCCTGTGATGACAGTGGTTTCATCTGGATTGACTTTAGCTATTTATTGGATTGGCTCTTATCTGATTAATGATAT
TTCTGTACCTAAAGTTACAGGAACAAGTGTATCTGTTTTGGCTGCTAAATCAGCTATCACTGATCGAGTGGATCTTTTTT
CAAACATGGTTGTTTTTTCATCTTATGCTATGCAAGTTGTTATGGGATTTATGATGATGGTAGCTATTTTTATCATCATG
CCTCGTGCTTTAGTATCGGCTAGACGTATTAATGAGGTACTAACTTTAGCCCCAACAGTAACTTTTAAAGAAAATAGTCA
TATCCAAAGTGCACAAAAAGGTCAAATTGAGTTTCAAGATGTGTCATTTCATTATAGTAAAGATTCTGAAGCGGTTATTG
AACATGTATCTTTCAAAGCAGATACTGGTCAGACAGTGGCATTTATTGGGTCTACAGGTTCTGGAAAATCCACTTTAGTC
AATTTAGTTCCACGTTTTTATGACGCCACAGAGGGGTCAATTAAACTTGATGGCATTGATATAAAGAAATACTCTCACAA
TGATTTGAATAATAAAATTGGCTATATTCCACAGAAAGCTGTTCTCTTTAGTGGGACAGTACGTTCTAATATGGTTTTTG
GAGAGAGCGGCAGGAAGGAACTTAGTGATGAACAAATTTGGCAAGCACTCGAATTAGCGCAAGCTAAAGAATTTATCGAA
GCTAAAGAAAAAGGATTAGATATAGAAGTCGCTCAAGGTGGTAGTAACTTTTCAGGAGGACAAAAACAACGCTTGGCAAT
CGCACGTGCTTTAGCACGTCACCCTGAAATTCTCATTTTTGATGACTCATTTTCAGCGTTAGATTATAAAACAGATCATA
TTTTACGCCATGAGCTGAAAGAAAAAACAGCTGCTATGACGAAATTAATTGTCGCTCAACGCATTTCAACTATCATGGAT
GCTGATCTCATTTTAGTGCTAGATCAAGGTAAAGTTGTTGGGCAAGGAACACATAAGGAATTGTTATCAAATAATGAAGT
GTATCAAGAGATAGCCTATTCTCAATTGTCTAAGGAGGAATTGGAAAATGAAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(374-523)

ABC transporter transmembrane region (ABC_membrane)

(21-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

78.275

99.669

0.78

Multiple sequence alignment