Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HW42_RS08880 Genome accession   NZ_CP009104
Coordinates   1830317..1830946 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RM9387     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1825317..1835946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW42_RS08855 (HW42_08615) ycbZ 1825707..1827467 (-) 1761 WP_000156526.1 Lon protease family protein -
  HW42_RS08860 (HW42_08620) matP 1827653..1828105 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HW42_RS08865 (HW42_08625) ompA 1828180..1829232 (-) 1053 WP_000750419.1 porin OmpA -
  HW42_RS08875 (HW42_08630) sulA 1829589..1830098 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HW42_RS08880 (HW42_08635) sxy/tfoX 1830317..1830946 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HW42_RS08885 (HW42_08640) yccS 1830909..1833071 (-) 2163 WP_000875019.1 YccS family putative transporter -
  HW42_RS08890 (HW42_08645) yccF 1833081..1833527 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HW42_RS08895 (HW42_08650) helD 1833650..1835704 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=126795 HW42_RS08880 WP_000839153.1 1830317..1830946(+) (sxy/tfoX) [Escherichia coli strain RM9387]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=126795 HW42_RS08880 WP_000839153.1 1830317..1830946(+) (sxy/tfoX) [Escherichia coli strain RM9387]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment