Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RR41_RS17880 Genome accession   NZ_CP007712
Coordinates   3719611..3721098 (+) Length   495 a.a.
NCBI ID   WP_000010456.1    Uniprot ID   -
Organism   Acinetobacter baumannii LAC-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3714611..3726098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR41_RS17855 (ABLAC_35570) ribD 3715527..3716612 (-) 1086 WP_001292519.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  RR41_RS17860 (ABLAC_35580) nrdR 3716628..3717086 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  RR41_RS17865 (ABLAC_35590) - 3717245..3718642 (-) 1398 WP_000738519.1 ammonium transporter -
  RR41_RS17870 (ABLAC_35600) glnK 3718700..3719038 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  RR41_RS17875 (ABLAC_35610) - 3719318..3719545 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  RR41_RS17880 (ABLAC_35620) comM 3719611..3721098 (+) 1488 WP_000010456.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RR41_RS17885 (ABLAC_35630) - 3721113..3722547 (-) 1435 Protein_3506 PLP-dependent aminotransferase family protein -
  RR41_RS17890 (ABLAC_35640) - 3722659..3723435 (+) 777 WP_000845031.1 aldolase -
  RR41_RS17895 (ABLAC_35650) - 3723451..3724329 (+) 879 WP_000772990.1 dihydrodipicolinate synthase family protein -
  RR41_RS17900 (ABLAC_35660) - 3724372..3725193 (-) 822 WP_000975215.1 TorF family putative porin -
  RR41_RS20125 - 3725250..3725420 (-) 171 WP_005120638.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54453.37 Da        Isoelectric Point: 7.4186

>NTDB_id=122828 RR41_RS17880 WP_000010456.1 3719611..3721098(+) (comM) [Acinetobacter baumannii LAC-4]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEIIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=122828 RR41_RS17880 WP_000010456.1 3719611..3721098(+) (comM) [Acinetobacter baumannii LAC-4]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCGGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAATCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAACGCTATCAAAACCGCATATCGGGAC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGATCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Haemophilus influenzae Rd KW20

49.699

100

0.501
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.687

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469

Multiple sequence alignment