Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   AJ82_RS17355 Genome accession   NZ_CP007244
Coordinates   3600269..3601414 (+) Length   381 a.a.
NCBI ID   WP_025285423.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3595269..3606414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS17335 (AJ82_19470) - 3596166..3596594 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  AJ82_RS17340 - 3596748..3597260 (+) 513 Protein_3437 bacteriocin biosynthesis protein AlbG -
  AJ82_RS17345 (AJ82_19480) - 3597267..3598643 (-) 1377 WP_025285421.1 YncE family protein -
  AJ82_RS17350 (AJ82_19485) - 3598683..3600038 (-) 1356 WP_025285422.1 YncE family protein -
  AJ82_RS17355 (AJ82_19490) rapF 3600269..3601414 (+) 1146 WP_025285423.1 tetratricopeptide repeat protein Regulator
  AJ82_RS17360 (AJ82_19495) phrF 3601398..3601517 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AJ82_RS17365 (AJ82_19500) - 3601715..3601918 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  AJ82_RS17370 (AJ82_19505) - 3601932..3602135 (+) 204 WP_007407641.1 hypothetical protein -
  AJ82_RS17375 (AJ82_19510) - 3602170..3602355 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  AJ82_RS17380 (AJ82_19515) - 3602541..3602822 (+) 282 WP_007407643.1 hypothetical protein -
  AJ82_RS17385 (AJ82_19520) - 3602866..3603378 (+) 513 WP_023357177.1 stage II sporulation protein M -
  AJ82_RS17395 (AJ82_19530) - 3603969..3604187 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  AJ82_RS17400 (AJ82_19535) speB 3604355..3605227 (-) 873 WP_007614448.1 agmatinase -
  AJ82_RS17405 (AJ82_19540) speE 3605286..3606116 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45532.46 Da        Isoelectric Point: 4.5155

>NTDB_id=118262 AJ82_RS17355 WP_025285423.1 3600269..3601414(+) (rapF) [Bacillus velezensis TrigoCor1448]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKTGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=118262 AJ82_RS17355 WP_025285423.1 3600269..3601414(+) (rapF) [Bacillus velezensis TrigoCor1448]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTCTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAACCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTACGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(190-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567

Multiple sequence alignment