Detailed information NTG0115073

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: X874_RS04115
• Genome accession: NZ_CP006944
• Coordinates: 858742..859938 (+)
• Length: 398 a.a.
• NCBI ID: WP_025247573.1
• Uniprot ID: -
• Organism: Mannheimia varigena USDA-ARS-USMARC-1312
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 853742..864938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
X874_RS04095 (X874_8110)	-	855012..855245 (+)	234	WP_025247569.1	YgjV family protein	-
X874_RS04100 (X874_8120)	radA	855299..856678 (-)	1380	WP_025247570.1	DNA repair protein RadA	-
X874_RS04105 (X874_8130)	pilA	856858..857337 (+)	480	WP_025247571.1	prepilin peptidase-dependent pilin	Machinery gene
X874_RS04110 (X874_8140)	pilB	857358..858749 (+)	1392	WP_025247572.1	GspE/PulE family protein	Machinery gene
X874_RS04115 (X874_8150)	pilC	858742..859938 (+)	1197	WP_025247573.1	type II secretion system F family protein	Machinery gene
X874_RS04120 (X874_8160)	-	859942..860598 (+)	657	WP_025247574.1	prepilin peptidase	-
X874_RS04125 (X874_8170)	coaE	860630..861265 (+)	636	WP_025247575.1	dephospho-CoA kinase	-
X874_RS04130 (X874_8180)	yacG	861247..861432 (+)	186	WP_025217069.1	DNA gyrase inhibitor YacG	-
X874_RS04135 (X874_8190)	holA	861433..862455 (-)	1023	WP_025247576.1	DNA polymerase III subunit delta	-
X874_RS04140 (X874_8200)	lptE	862495..862983 (-)	489	WP_025217071.1	LPS assembly lipoprotein LptE	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45647.25 Da
• Isoelectric Point: 9.6400

>NTDB_id=115073 X874_RS04115 WP_025247573.1 858742..859938(+) (pilC) [Mannheimia varigena USDA-ARS-USMARC-1312]
MAKIYEFHWKAVDRFQQKRKGRLLSSNREELENRLLTKGYQQIRISRNFVFSQNPKREEISQFLAQLALLVNSAVPLKQA
LVMILQNCRNIKLHLWLSELIQLIESGYAFSQSLERLNKFIANQEIQLIKMGEQSGKLGLILTNLAESRLKSDKLAKKVK
KILFYPAIVLFISFSLSIGLLVFIVPQFAELYGAKEQALPLITEILFSLSQCLIEQKNLLFSLFLLAVIFFLFFAKRGNW
IAKLKISVLSKLPVFRQIIEQARIVFFSQNIALMLNAHIPLDVALKSFLSEKSDDPILQKEVEFMLNLLQQGYKFSQGIN
SNVFGLDMLQMIEIGEQSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLLMGVIVGTIIVGLYLPIFDMGSLVE

Nucleotide

• Length: 1197 bp

>NTDB_id=115073 X874_RS04115 WP_025247573.1 858742..859938(+) (pilC) [Mannheimia varigena USDA-ARS-USMARC-1312]
ATGGCTAAAATCTATGAGTTTCATTGGAAGGCGGTAGATCGTTTTCAACAAAAACGTAAGGGCAGATTATTATCTTCAAA
CAGAGAAGAGCTTGAAAATAGATTACTTACTAAAGGTTATCAGCAAATTCGCATTAGCCGAAACTTTGTGTTTTCACAAA
ACCCTAAAAGAGAAGAAATTAGTCAATTTCTCGCTCAGCTTGCTTTGTTGGTTAATTCTGCTGTGCCGTTAAAACAAGCC
TTAGTAATGATTTTACAAAACTGTCGAAATATTAAGCTTCATCTATGGCTAAGCGAGCTTATTCAACTCATTGAAAGTGG
TTATGCTTTTTCACAATCATTAGAACGGCTCAATAAATTTATCGCTAACCAAGAAATTCAACTAATTAAAATGGGCGAGC
AGAGCGGAAAACTCGGTTTGATTTTAACCAACTTGGCGGAGAGCAGACTTAAATCGGATAAACTGGCTAAAAAAGTCAAG
AAAATCCTGTTTTATCCAGCAATTGTACTGTTTATCTCATTCTCTCTTTCTATCGGACTTTTGGTATTCATCGTGCCACA
ATTTGCCGAACTTTACGGCGCAAAAGAACAAGCCTTACCGCTGATTACTGAGATTTTATTTTCTCTTTCTCAATGTTTGA
TTGAACAGAAGAATCTTTTATTCAGTTTATTTTTACTAGCGGTTATTTTTTTCTTATTTTTTGCAAAAAGAGGGAATTGG
ATAGCGAAATTGAAAATCAGCGTATTGTCTAAGCTCCCTGTTTTTAGACAAATTATAGAGCAAGCTCGCATTGTCTTTTT
TAGCCAAAATATTGCGTTGATGTTGAATGCTCATATTCCATTAGATGTCGCATTAAAATCCTTTTTATCTGAAAAAAGTG
ATGACCCTATATTACAAAAAGAAGTTGAGTTTATGCTCAATCTCTTACAACAAGGCTATAAGTTTTCGCAAGGTATCAAC
TCAAATGTGTTTGGCTTAGATATGCTTCAGATGATTGAGATAGGCGAACAGAGCGGTAATGTTGCTAAAATGTGTGAGCA
TATTAGCGAGATGTATCAACAAAAACTGGATTATCAAATTGATATTCTCTCCCAATTATTAGAGCCAATGCTGATGCTAT
TAATGGGCGTAATTGTCGGCACTATTATTGTTGGGCTGTACTTGCCTATTTTCGATATGGGCTCATTGGTGGAGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	56.359	100	0.568
pilC	Haemophilus influenzae Rd KW20	42.643	100	0.43
pilC	Haemophilus influenzae 86-028NP	41.646	100	0.42