Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   EL130_RS02365 Genome accession   NZ_LR134320
Coordinates   455658..456809 (+) Length   383 a.a.
NCBI ID   WP_002283523.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 450658..461809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS02345 (NCTC10832_00439) mutL 450840..452795 (+) 1956 WP_002283525.1 DNA mismatch repair endonuclease MutL -
  EL130_RS02350 (NCTC10832_00440) ruvA 452978..453571 (+) 594 WP_002262395.1 Holliday junction branch migration protein RuvA -
  EL130_RS02355 (NCTC10832_00441) - 453653..454213 (+) 561 WP_002268198.1 DNA-3-methyladenine glycosylase I -
  EL130_RS02360 (NCTC10832_00442) cinA 454362..455618 (+) 1257 WP_002283524.1 competence/damage-inducible protein A Machinery gene
  EL130_RS02365 (NCTC10832_00443) recA 455658..456809 (+) 1152 WP_002283523.1 recombinase RecA Machinery gene
  EL130_RS02370 (NCTC10832_00444) spx 456894..457292 (+) 399 WP_002262391.1 transcriptional regulator Spx -
  EL130_RS02375 (NCTC10832_00445) - 457543..457968 (+) 426 WP_002266116.1 hypothetical protein -
  EL130_RS02380 - 458109..458309 (+) 201 Protein_417 hypothetical protein -
  EL130_RS02385 (NCTC10832_00446) brsM 458300..458746 (-) 447 WP_002262388.1 bacteriocin genes regulator BrsM Regulator
  EL130_RS02390 (NCTC10832_00447) brsR 458759..459193 (-) 435 WP_002277469.1 bacteriocin genes transcriptional regulator BrsR Regulator
  EL130_RS02395 (NCTC10832_00448) - 459361..459630 (+) 270 WP_002262386.1 IreB family regulatory phosphoprotein -
  EL130_RS02400 (NCTC10832_00449) ruvX 459627..460046 (+) 420 WP_002277470.1 Holliday junction resolvase RuvX -
  EL130_RS02405 (NCTC10832_00450) - 460127..460426 (+) 300 WP_002262384.1 DUF1292 domain-containing protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 41404.05 Da        Isoelectric Point: 5.0654

>NTDB_id=1121407 EL130_RS02365 WP_002283523.1 455658..456809(+) (recA) [Streptococcus mutans strain NCTC10832]
MAKRIKKTEEITKKFGDERKKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKIGQGSE
NAKKFLADNPEIFDDIVHKVRVQYGLIEEDNTEEKQSSKEKETDEKADKNLVLELDDTIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1121407 EL130_RS02365 WP_002283523.1 455658..456809(+) (recA) [Streptococcus mutans strain NCTC10832]
TTGGCCAAAAGAATAAAAAAGACAGAAGAAATAACGAAAAAATTTGGTGATGAGCGTAAGAAAGCTCTTGATGATGCTTT
GAAAAACATCGAAAAAGATTTTGGTAAAGGTGCAGTTATGCGTCTGGGTGAACGCGCTGAACAAAAGGTTCAGGTGATGA
GTTCAGGAAGTCTGGCTCTTGATATTGCTCTTGGGGCAGGCGGTTATCCAAAAGGGCGTATCGTTGAGATTTACGGGCCA
GAATCTTCTGGTAAGACAACTGTCGCTCTTCATGCTGTTGCTCAGGCGCAAAAAGATGGCGGTATTGCCGCTTTCATTGA
TGCAGAACATGCCCTTGATCCAGCCTATGCTGCTGCTCTTGGCGTTAATATTGATGAGCTTTTGCTTTCACAACCAGATT
CAGGAGAACAGGGTCTTGAAATTGCAGGGAAATTGATTGATTCTGGCGCTGTTGATTTAGTTGTTGTTGACTCAGTGGCA
GCTTTAGTACCACGTGCGGAGATTGACGGAGATATTGGTGATAGTCATGTTGGCTTACAAGCACGCATGATGAGTCAAGC
GATGCGTAAATTATCAGCTTCAATCAATAAAACAAAAACCATTGCCATTTTTATTAATCAATTGCGGGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGCGGGCGTGCCTTGAAGTTTTATTCTTCTGTGCGTCTTGATGTCCGTGGC
AATACTCAAATTAAAGGAACCGGGGAACAAAAAGACAGCAATATTGGTAAAGAGACCAAAATTAAAGTTGTTAAAAATAA
AGTTGCTCCACCATTTAAGGAAGCTTTTGTAGAAATTATATATGGTGAAGGCATTTCTCGTACAGGTGAATTAGTTAAGA
TTGCCAGTGATTTGGGAATTATCCAAAAAGCTGGAGCTTGGTACTCTTATAATGGTGAAAAAATTGGGCAAGGTTCTGAA
AATGCTAAAAAATTCCTAGCTGATAATCCAGAAATTTTTGATGACATCGTTCATAAAGTGCGTGTTCAATATGGTTTAAT
TGAGGAAGATAATACTGAAGAAAAACAGTCTTCTAAAGAAAAGGAAACTGATGAGAAAGCTGACAAAAACCTTGTTTTAG
AGCTGGATGATACAATTGAGCTTGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

99.739

100

0.997

  recA Streptococcus pyogenes NZ131

86.945

100

0.869

  recA Streptococcus pneumoniae D39

82.946

100

0.838

  recA Streptococcus pneumoniae Rx1

82.946

100

0.838

  recA Streptococcus pneumoniae R6

82.946

100

0.838

  recA Streptococcus pneumoniae TIGR4

82.946

100

0.838

  recA Streptococcus mitis NCTC 12261

84.031

99.739

0.838

  recA Streptococcus mitis SK321

83.508

99.739

0.833

  recA Lactococcus lactis subsp. cremoris KW2

76.369

90.601

0.692

  recA Latilactobacillus sakei subsp. sakei 23K

68.208

90.339

0.616

  recA Bacillus subtilis subsp. subtilis str. 168

68.389

85.901

0.587

  recA Neisseria gonorrhoeae MS11

60.399

91.645

0.554

  recA Neisseria gonorrhoeae MS11

60.399

91.645

0.554

  recA Neisseria gonorrhoeae strain FA1090

60.399

91.645

0.554

  recA Acinetobacter baylyi ADP1

59.375

91.906

0.546

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.411

89.034

0.538

  recA Glaesserella parasuis strain SC1401

60.294

88.773

0.535

  recA Acinetobacter baumannii D1279779

61.585

85.64

0.527

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

84.334

0.522

  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

84.856

0.517

  recA Vibrio cholerae strain A1552

60.923

84.856

0.517

  recA Pseudomonas stutzeri DSM 10701

57.864

87.99

0.509

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

86.423

0.499

  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.768

0.493

  recA Helicobacter pylori strain NCTC11637

56.287

87.206

0.491

  recA Helicobacter pylori 26695

56.287

87.206

0.491


Multiple sequence alignment