Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ACNQFN_RS08385 Genome accession   NZ_CP183038
Coordinates   1738003..1738182 (-) Length   59 a.a.
NCBI ID   WP_418648532.1    Uniprot ID   -
Organism   Thauera butanivorans strain TB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1735729..1748535 1738003..1738182 within 0


Gene organization within MGE regions


Location: 1735729..1748535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNQFN_RS08370 (ACNQFN_08370) - 1735729..1736595 (-) 867 WP_418648529.1 hypothetical protein -
  ACNQFN_RS08375 (ACNQFN_08375) - 1736612..1737415 (-) 804 WP_418648530.1 hypothetical protein -
  ACNQFN_RS08380 (ACNQFN_08380) - 1737539..1737985 (-) 447 WP_418648531.1 hypothetical protein -
  ACNQFN_RS08385 (ACNQFN_08385) pilV 1738003..1738182 (-) 180 WP_418648532.1 pilin Machinery gene
  ACNQFN_RS08390 (ACNQFN_08390) - 1738615..1739049 (+) 435 WP_418648533.1 DUF4351 domain-containing protein -
  ACNQFN_RS08395 (ACNQFN_08395) - 1739124..1739690 (+) 567 WP_418648534.1 hypothetical protein -
  ACNQFN_RS08400 (ACNQFN_08400) - 1739808..1740836 (+) 1029 WP_418648535.1 GSU2403 family nucleotidyltransferase fold protein -
  ACNQFN_RS08405 (ACNQFN_08405) ispH 1740841..1741797 (-) 957 WP_418648536.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACNQFN_RS08410 (ACNQFN_08410) - 1741821..1742249 (-) 429 WP_418648537.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ACNQFN_RS08415 (ACNQFN_08415) lspA 1742246..1742794 (-) 549 WP_418648538.1 signal peptidase II -
  ACNQFN_RS08420 (ACNQFN_08420) ileS 1742787..1745597 (-) 2811 WP_418648539.1 isoleucine--tRNA ligase -
  ACNQFN_RS08425 (ACNQFN_08425) - 1745654..1746598 (-) 945 WP_418648540.1 bifunctional riboflavin kinase/FAD synthetase -
  ACNQFN_RS08430 (ACNQFN_08430) - 1746674..1748065 (-) 1392 WP_418648541.1 N-acetylmuramoyl-L-alanine amidase -
  ACNQFN_RS08435 (ACNQFN_08435) tsaE 1748005..1748535 (-) 531 WP_418648542.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6323.55 Da        Isoelectric Point: 10.2806

>NTDB_id=1103733 ACNQFN_RS08385 WP_418648532.1 1738003..1738182(-) (pilV) [Thauera butanivorans strain TB]
MKKVQKGFTLIELMIVVAIIGILAAVAIPQFNDYRAKANDTAAHSDATNLLKILAAAQK

Nucleotide


Download         Length: 180 bp        

>NTDB_id=1103733 ACNQFN_RS08385 WP_418648532.1 1738003..1738182(-) (pilV) [Thauera butanivorans strain TB]
ATGAAAAAGGTGCAAAAGGGCTTCACGCTGATCGAATTGATGATCGTCGTGGCAATCATCGGCATTCTGGCCGCGGTGGC
AATTCCGCAGTTCAATGATTATCGCGCCAAGGCGAATGACACTGCCGCCCACAGCGATGCCACGAACCTGCTCAAAATTC
TCGCTGCAGCCCAAAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Eikenella corrodens VA1

58.929

94.915

0.559
  comP Acinetobacter baylyi ADP1

68.889

76.271

0.525
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

66.667

76.271

0.508
  pilA2 Legionella pneumophila str. Paris

62.5

81.356

0.508
  pilA2 Legionella pneumophila strain ERS1305867

62.5

81.356

0.508
  pilA Acinetobacter nosocomialis M2

65.217

77.966

0.508
  pilA Pseudomonas aeruginosa PAK

70.732

69.492

0.492
  pilA Ralstonia pseudosolanacearum GMI1000

72.5

67.797

0.492
  pilA Acinetobacter baumannii strain A118

63.043

77.966

0.492
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

66.667

71.186

0.475
  pilA/pilAI Pseudomonas stutzeri DSM 10701

68.293

69.492

0.475
  pilA Vibrio campbellii strain DS40M4

75.676

62.712

0.475
  pilE Neisseria gonorrhoeae strain FA1090

71.053

64.407

0.458
  pilE Neisseria gonorrhoeae MS11

71.053

64.407

0.458
  pilE Acinetobacter baumannii D1279779

49.057

89.831

0.441
  pilA Vibrio cholerae C6706

72.222

61.017

0.441
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

72.222

61.017

0.441
  pilA Vibrio cholerae strain A1552

72.222

61.017

0.441
  pilA Vibrio parahaemolyticus RIMD 2210633

59.524

71.186

0.424
  comF Acinetobacter baylyi ADP1

56.818

74.576

0.424
  pilA Glaesserella parasuis strain SC1401

56.818

74.576

0.424
  pilA/pilA4 Thermus thermophilus HB27

69.444

61.017

0.424
  pilA/pilAII Pseudomonas stutzeri DSM 10701

50

81.356

0.407
  pilA Haemophilus influenzae 86-028NP

62.162

62.712

0.39
  pilA Haemophilus influenzae Rd KW20

60.526

64.407

0.39
  pilA/pilA1 Synechocystis sp. PCC 6803

50

74.576

0.373
  pilL Neisseria gonorrhoeae MS11

44

84.746

0.373
  ctsG Campylobacter jejuni subsp. jejuni 81-176

43.137

86.441

0.373

Multiple sequence alignment