Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AABA19_RS09810 Genome accession   NZ_AP028609
Coordinates   1906706..1907659 (-) Length   317 a.a.
NCBI ID   WP_338170756.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1901706..1912659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS09780 (TKY121806_19070) - 1901841..1903097 (+) 1257 WP_338170753.1 ISL3-like element IS1167A family transposase -
  AABA19_RS09785 (TKY121806_19080) jag 1903141..1904127 (-) 987 WP_050258901.1 RNA-binding cell elongation regulator Jag/EloR -
  AABA19_RS09790 (TKY121806_19090) - 1904146..1904970 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  AABA19_RS09795 (TKY121806_19100) rnpA 1904945..1905316 (-) 372 WP_000739246.1 ribonuclease P protein component -
  AABA19_RS09800 - 1905333..1905464 (-) 132 WP_000768904.1 hypothetical protein -
  AABA19_RS09805 (TKY121806_19110) - 1905465..1906655 (-) 1191 WP_000167766.1 acetate kinase -
  AABA19_RS09810 (TKY121806_19120) comYH 1906706..1907659 (-) 954 WP_338170756.1 class I SAM-dependent methyltransferase Machinery gene
  AABA19_RS09815 - 1907720..1908314 (-) 595 Protein_1910 class I SAM-dependent methyltransferase -
  AABA19_RS09820 (TKY121806_19150) comGG/cglG 1908451..1908864 (-) 414 WP_050114148.1 competence type IV pilus minor pilin ComGG Machinery gene
  AABA19_RS09825 (TKY121806_19160) comGF/cglF 1908842..1909303 (-) 462 WP_063643062.1 competence type IV pilus minor pilin ComGF Machinery gene
  AABA19_RS09830 (TKY121806_19170) comGE/cglE 1909266..1909568 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  AABA19_RS09835 (TKY121806_19180) comGD/cglD 1909531..1909935 (-) 405 WP_000588023.1 competence type IV pilus minor pilin ComGD Machinery gene
  AABA19_RS09840 (TKY121806_19190) comGC/cglC 1909928..1910254 (-) 327 WP_061630249.1 comG operon protein ComGC Machinery gene
  AABA19_RS09845 (TKY121806_19200) comGB/cglB 1910256..1911272 (-) 1017 WP_075270915.1 competence type IV pilus assembly protein ComGB Machinery gene
  AABA19_RS09850 (TKY121806_19210) comGA/cglA/cilD 1911220..1912161 (-) 942 WP_016398028.1 competence type IV pilus ATPase ComGA Machinery gene
  AABA19_RS09855 (TKY121806_19220) - 1912237..1912602 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35739.06 Da        Isoelectric Point: 4.2995

>NTDB_id=106463 AABA19_RS09810 WP_338170756.1 1906706..1907659(-) (comYH) [Streptococcus pneumoniae strain Sep4]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKENNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGAIFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=106463 AABA19_RS09810 WP_338170756.1 1906706..1907659(-) (comYH) [Streptococcus pneumoniae strain Sep4]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAGGAGAACAATC
AAACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTATTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment