Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABGU65_RS05770 Genome accession   NZ_OZ040015
Coordinates   1197341..1198402 (+) Length   353 a.a.
NCBI ID   WP_000963143.1    Uniprot ID   P0A7G7
Organism   Escherichia coli isolate 30224_1#291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192341..1203402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU65_RS05740 srlB 1193061..1193432 (-) 372 WP_000216213.1 PTS glucitol/sorbitol transporter subunit IIA -
  ABGU65_RS05745 srlE 1193443..1194402 (-) 960 WP_000196936.1 PTS glucitol/sorbitol transporter subunit IIB -
  ABGU65_RS05750 srlA 1194399..1194962 (-) 564 WP_000573324.1 PTS glucitol/sorbitol transporter subunit IIC -
  ABGU65_RS05755 mltB 1195219..1196304 (+) 1086 WP_001546075.1 lytic murein transglycosylase B -
  ABGU65_RS05760 - 1196343..1196582 (-) 240 WP_000985460.1 hypothetical protein -
  ABGU65_RS05765 pncC 1196764..1197261 (+) 498 WP_000140273.1 nicotinamide-nucleotide amidase -
  ABGU65_RS05770 recA 1197341..1198402 (+) 1062 WP_000963143.1 recombinase RecA Machinery gene
  ABGU65_RS05775 recX 1198471..1198971 (+) 501 WP_000140501.1 recombination regulator RecX -
  ABGU65_RS05780 alaS 1199100..1201730 (+) 2631 WP_000047157.1 alanine--tRNA ligase -
  ABGU65_RS05785 csrA 1201965..1202150 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37973.37 Da        Isoelectric Point: 4.8171

>NTDB_id=1049585 ABGU65_RS05770 WP_000963143.1 1197341..1198402(+) (recA) [Escherichia coli isolate 30224_1#291]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1049585 ABGU65_RS05770 WP_000963143.1 1197341..1198402(+) (recA) [Escherichia coli isolate 30224_1#291]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCAGAATCTTCCGGTAAAACCACGCTGACGTTGCAGGTG
ATCGCCGCAGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACTGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CACGTTCTGGTGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTTATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCAGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

93.768

0.79
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.768

0.79
  recA Pseudomonas stutzeri DSM 10701

74.184

95.467

0.708
  recA Acinetobacter baumannii D1279779

74.085

92.918

0.688
  recA Acinetobacter nosocomialis M2

73.78

92.918

0.686
  recA Acinetobacter baylyi ADP1

73.78

92.918

0.686
  recA Glaesserella parasuis strain SC1401

69.452

98.3

0.683
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.351

0.637
  recA Ralstonia pseudosolanacearum GMI1000

70.159

89.235

0.626
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Helicobacter pylori strain NCTC11637

61.721

95.467

0.589
  recA Streptococcus thermophilus LMG 18311

58.263

100

0.589
  recA Helicobacter pylori 26695

61.424

95.467

0.586
  recA Streptococcus pneumoniae Rx1

63.467

91.501

0.581
  recA Streptococcus pneumoniae R36A

63.467

91.501

0.581
  recA Streptococcus pneumoniae D39

63.467

91.501

0.581
  recA Streptococcus pneumoniae R6

63.467

91.501

0.581
  recA Streptococcus pneumoniae TIGR4

63.467

91.501

0.581
  recA Staphylococcus aureus strain ATCC 12600

62.577

92.351

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.785

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

94.334

0.572
  recA Streptococcus thermophilus LMD-9

62.154

92.068

0.572
  recA Streptococcus pyogenes NZ131

62.154

92.068

0.572
  recA Streptococcus mutans UA159

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.935

0.555