Detailed information NTG0104754

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8564_RS06465
• Genome accession: NZ_AP028359
• Coordinates: 1226571..1227530 (+)
• Length: 319 a.a.
• NCBI ID: WP_002876195.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10570
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1221571..1232530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8564_RS06440 (B10570_12870)	-	1221907..1222686 (-)	780	WP_002902667.1	glycosyltransferase family 25 protein	-
R8564_RS06445 (B10570_12880)	-	1222683..1223615 (-)	933	WP_052788764.1	glycosyltransferase family 2 protein	-
R8564_RS06450 (B10570_12890)	-	1223608..1224498 (-)	891	WP_002901180.1	glycosyltransferase	-
R8564_RS06455 (B10570_12900)	-	1224510..1225652 (-)	1143	WP_052788765.1	glycosyltransferase family 8 protein	-
R8564_RS06460 (B10570_12910)	waaV	1225703..1226512 (-)	810	WP_002901182.1	glycosyltransferase family 2 protein	-
R8564_RS06465 (B10570_12920)	waaF	1226571..1227530 (+)	960	WP_002876195.1	lipopolysaccharide heptosyltransferase II	Regulator
R8564_RS06470 (B10570_12930)	gmhA	1227511..1228071 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
R8564_RS06475 (B10570_12940)	rfaE1	1228068..1229453 (-)	1386	WP_002901184.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8564_RS06480 (B10570_12950)	rfaD	1229446..1230399 (-)	954	WP_002860242.1	ADP-glyceromanno-heptose 6-epimerase	-
R8564_RS06485 (B10570_12960)	gmhB	1230400..1230961 (-)	562	Protein_1268	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8564_RS06490 (B10570_12970)	-	1231042..1231344 (+)	303	WP_002852762.1	c-type cytochrome	-
R8564_RS06495 (B10570_12980)	ccoS	1231367..1231573 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36607.08 Da
• Isoelectric Point: 10.2870

>NTDB_id=104754 R8564_RS06465 WP_002876195.1 1226571..1227530(+) (waaF) [Campylobacter jejuni strain BCH-10570]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=104754 R8564_RS06465 WP_002876195.1 1226571..1227530(+) (waaF) [Campylobacter jejuni strain BCH-10570]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.025	99.687	0.937