Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LSAJ54_RS02585 Genome accession   NZ_LT960790
Coordinates   522843..523910 (+) Length   355 a.a.
NCBI ID   WP_056948845.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 517843..528910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS02565 (LSAJ54_0507) yfmH 519009..520313 (+) 1305 WP_099947261.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LSAJ54_RS02570 (LSAJ54_0508) ymfI 520313..521044 (+) 732 WP_099947262.1 elongation factor P 5-aminopentanone reductase -
  LSAJ54_RS02575 (LSAJ54_0509) - 521126..522049 (+) 924 WP_056948849.1 helix-turn-helix domain-containing protein -
  LSAJ54_RS02580 (LSAJ54_0510) pgsA 522075..522659 (+) 585 WP_056948847.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LSAJ54_RS02585 (LSAJ54_0511) recA 522843..523910 (+) 1068 WP_056948845.1 recombinase RecA Machinery gene
  LSAJ54_RS02590 (LSAJ54_0512) rny 524297..525862 (+) 1566 WP_056948843.1 ribonuclease Y -
  LSAJ54_RS02595 (LSAJ54_0513) - 526015..527103 (+) 1089 WP_056948881.1 glycosyltransferase family 4 protein -
  LSAJ54_RS02600 (LSAJ54_0514) - 527129..527794 (-) 666 WP_056948841.1 YigZ family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38209.21 Da        Isoelectric Point: 4.6748

>NTDB_id=1032589 LSAJ54_RS02585 WP_056948845.1 522843..523910(+) (recA) [Latilactobacillus sakei strain J54]
MAKDERQAALDAALKKIEKNFGKGSIMRMGEKVDTQVSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYSTVRLEVRRAETIKNGTDMIGN
RARIKVVKNKVAPPFKVAEVDIMYGQGISRTGELVDMAVEKDIINKSGSWYSYGSERIGQGRENAKNYLADHEDVEDEVR
LKVRAAYGISDVPEEGLPTNEDEQINILPDDSTEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1032589 LSAJ54_RS02585 WP_056948845.1 522843..523910(+) (recA) [Latilactobacillus sakei strain J54]
TTGGCTAAAGATGAAAGACAAGCAGCACTTGATGCTGCCCTAAAGAAGATTGAAAAGAATTTTGGTAAAGGTTCAATTAT
GCGCATGGGTGAAAAGGTTGATACACAAGTCTCAACAGTTTCATCTGGCTCATTGGCATTGGACGAAGCGCTCGGAGTAG
GTGGCTATCCTCGTGGCCGGATCGTTGAAATTTACGGCCCTGAAAGTTCAGGTAAAACAACTGTTGCATTACACGCTGTT
GCCGAAGTGCAAAAGCAAGGTGGCACGGCTGCTTATATCGATGCTGAAAATGCGATGGATCCTAAGTACGCAACAGCACT
TGGTGTTAATATCGATGACTTACTCTTGTCACAACCTGATACTGGGGAACAAGGCTTAGAAATCGCTGATGCCTTGGTAT
CAAGTGGGGCCGTTGATATTTTAGTAGTCGATTCAGTTGCTGCTTTGGTACCACGTGCTGAAATCGAAGGTGAAATGGGT
GACGCCCACGTTGGCTTACAAGCCCGTTTGATGTCACAAGCCTTACGTAAATTATCAGGAACAATTAATAAGACGAAGAC
GATTGCGTTATTCATTAACCAAATCCGTGAAAAAGTCGGCGTGATGTTTGGTAATCCCGAAGTCACACCAGGTGGGCGTG
CTTTGAAATTCTATTCAACTGTTCGGCTTGAAGTCCGGCGTGCTGAAACCATCAAGAATGGGACCGACATGATTGGGAAC
CGCGCCCGCATTAAAGTTGTTAAGAATAAGGTAGCACCACCATTTAAGGTCGCTGAAGTTGATATCATGTACGGTCAAGG
GATTTCCAGGACCGGTGAATTGGTTGATATGGCGGTTGAAAAAGACATTATCAATAAGAGTGGTTCTTGGTACTCTTATG
GCTCAGAACGAATTGGTCAAGGGCGTGAAAATGCTAAAAACTATTTGGCTGATCATGAAGATGTCGAAGATGAAGTTCGT
TTGAAGGTTAGAGCAGCTTATGGTATTTCAGATGTACCAGAAGAAGGTCTTCCCACAAATGAGGATGAACAAATAAATAT
TTTGCCAGATGATTCAACAGAAGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

99.437

100

0.994
  recA Bacillus subtilis subsp. subtilis str. 168

74.924

92.113

0.69
  recA Streptococcus thermophilus LMD-9

66.298

100

0.676
  recA Streptococcus thermophilus LMG 18311

65.753

100

0.676
  recA Streptococcus mutans UA159

68.208

97.465

0.665
  recA Streptococcus pyogenes NZ131

71.429

92.676

0.662
  recA Lactococcus lactis subsp. cremoris KW2

70.359

94.085

0.662
  recA Streptococcus mitis SK321

68.222

96.62

0.659
  recA Streptococcus pneumoniae R6

67.63

97.465

0.659
  recA Streptococcus pneumoniae Rx1

67.63

97.465

0.659
  recA Streptococcus pneumoniae D39

67.63

97.465

0.659
  recA Streptococcus pneumoniae R36A

67.63

97.465

0.659
  recA Streptococcus pneumoniae TIGR4

67.63

97.465

0.659
  recA Staphylococcus aureus strain ATCC 12600

71.341

92.394

0.659
  recA Streptococcus mitis NCTC 12261

69.486

93.239

0.648
  recA Neisseria gonorrhoeae MS11

62.691

92.113

0.577
  recA Neisseria gonorrhoeae strain FA1090

62.691

92.113

0.577
  recA Ralstonia pseudosolanacearum GMI1000

64.013

88.451

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

90.986

0.561
  recA Helicobacter pylori 26695

54.902

100

0.552
  recA Helicobacter pylori strain NCTC11637

54.902

100

0.552
  recA Vibrio cholerae strain A1552

60.748

90.423

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.748

90.423

0.549
  recA Pseudomonas stutzeri DSM 10701

57.227

95.493

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.327

92.113

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.021

92.113

0.544
  recA Acinetobacter baylyi ADP1

59.19

90.423

0.535
  recA Glaesserella parasuis strain SC1401

59.19

90.423

0.535
  recA Acinetobacter baumannii D1279779

58.567

90.423

0.53
  recA Acinetobacter nosocomialis M2

58.255

90.423

0.527