Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKV94_RS07330 Genome accession   NZ_LT906482
Coordinates   1455412..1456497 (+) Length   361 a.a.
NCBI ID   WP_003824171.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1450412..1461497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS07315 (SAMEA4412678_01432) - 1452091..1453455 (+) 1365 WP_035581020.1 Na+/H+ antiporter NhaC family protein -
  CKV94_RS07320 (SAMEA4412678_01433) - 1453575..1454312 (-) 738 WP_003824167.1 DUF4184 family protein -
  CKV94_RS07325 (SAMEA4412678_01434) trmB 1454461..1455156 (-) 696 WP_003824169.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CKV94_RS07330 (SAMEA4412678_01435) recA 1455412..1456497 (+) 1086 WP_003824171.1 recombinase RecA Machinery gene
  CKV94_RS07335 (SAMEA4412678_01436) trpE 1456629..1458107 (+) 1479 WP_003824172.1 anthranilate synthase component I -
  CKV94_RS07350 (SAMEA4412678_01439) rpoD 1458573..1460519 (-) 1947 WP_003824173.1 RNA polymerase sigma factor RpoD -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39059.61 Da        Isoelectric Point: 4.9405

>NTDB_id=1032049 CKV94_RS07330 WP_003824171.1 1455412..1456497(+) (recA) [Eikenella corrodens strain NCTC10596]
MAEAKNKADKASTPEDDKKKALAAALAQIEKNFGKGAIMKMDGSHQDENLEVISTGSLGVDLALGVGGLPRGRIVEIFGP
ESSGKTTLCLETIAQCQKNGGVCAFIDAENAFDPIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVA
ALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRK
GTPIKKGDDILGNETRVKVIKNKVAPPFRQAEFDILYGEGVSREGELIDWGDKVGIIKKSGAWYSYNGDKIGQGKDNVRV
WLKENPEVAAEIEAQIRKEVGINIEITEGQRDDTDGEQPEE

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1032049 CKV94_RS07330 WP_003824171.1 1455412..1456497(+) (recA) [Eikenella corrodens strain NCTC10596]
ATGGCAGAAGCAAAAAACAAGGCAGATAAAGCGTCTACTCCTGAAGACGATAAGAAAAAGGCTCTGGCCGCCGCGCTGGC
GCAGATTGAAAAGAATTTCGGCAAAGGCGCCATCATGAAGATGGACGGCAGCCATCAGGACGAAAACTTGGAAGTGATTT
CCACCGGCTCTTTGGGCGTGGATTTGGCGCTGGGCGTGGGCGGTTTGCCGCGAGGGCGCATTGTGGAAATCTTCGGCCCG
GAATCTTCCGGCAAAACCACACTGTGCTTGGAAACCATCGCGCAGTGCCAGAAAAACGGCGGCGTGTGTGCCTTTATCGA
TGCGGAAAACGCGTTCGACCCGATTTACGCGCGCAAGCTGGGCGTGAAGGTGGAAGAGCTGATGGTGTCGCAGCCGGACA
CGGGCGAGCAGGCGCTGGAAATCTGCGATATGCTGGTGCGCTCCGGCGGTGTGGACATGGTGGTGATCGACTCCGTGGCC
GCGCTGGTGCCGAAAGCAGAAATCGAAGGCGAAATGGGCGACAGCCACGTGGGCCTGCAAGCCCGCCTGATGAGCCAAGC
CTTGCGCAAGCTCACCGGCCACATTAAGAAAACCAACACTTTGGTGGTGTTCATCAACCAAATCCGCATGAAGATCGGCG
TGATGTTCGGCAGCCCGGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCTTCCGTGCGCCTCGATATCCGTAAA
GGGACGCCGATTAAAAAAGGCGATGACATCCTGGGTAACGAAACCCGCGTGAAGGTGATTAAAAACAAAGTGGCGCCGCC
ATTCCGTCAAGCCGAGTTCGACATCCTCTACGGCGAAGGCGTAAGCCGCGAAGGCGAGCTGATCGACTGGGGCGACAAAG
TCGGCATCATCAAAAAATCCGGCGCGTGGTATAGCTACAACGGCGATAAAATCGGCCAAGGCAAAGACAACGTGCGTGTG
TGGCTGAAAGAAAATCCGGAAGTGGCCGCCGAAATTGAAGCGCAAATCCGCAAGGAAGTCGGCATCAATATTGAGATTAC
CGAAGGCCAACGCGACGACACCGACGGTGAACAGCCGGAAGAGTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

86.127

95.845

0.825
  recA Neisseria gonorrhoeae strain FA1090

86.127

95.845

0.825
  recA Glaesserella parasuis strain SC1401

68.678

96.399

0.662
  recA Pseudomonas stutzeri DSM 10701

71.166

90.305

0.643
  recA Vibrio cholerae strain A1552

65.537

98.061

0.643
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.537

98.061

0.643
  recA Ralstonia pseudosolanacearum GMI1000

73.651

87.258

0.643
  recA Acinetobacter baylyi ADP1

65.896

95.845

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.768

95.568

0.609
  recA Acinetobacter nosocomialis M2

67.178

90.305

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.881

93.075

0.604
  recA Acinetobacter baumannii D1279779

66.871

90.305

0.604
  recA Helicobacter pylori 26695

63.964

92.244

0.59
  recA Helicobacter pylori strain NCTC11637

63.964

92.244

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

62.997

90.582

0.571
  recA Staphylococcus aureus strain ATCC 12600

62.614

91.136

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

59.593

95.291

0.568
  recA Streptococcus pneumoniae R36A

57.471

96.399

0.554
  recA Streptococcus pneumoniae TIGR4

57.471

96.399

0.554
  recA Streptococcus pneumoniae R6

57.471

96.399

0.554
  recA Streptococcus pneumoniae D39

57.471

96.399

0.554
  recA Streptococcus pneumoniae Rx1

57.471

96.399

0.554
  recA Streptococcus mitis NCTC 12261

57.849

95.291

0.551
  recA Streptococcus thermophilus LMD-9

59.05

93.352

0.551
  recA Streptococcus thermophilus LMG 18311

58.754

93.352

0.548
  recA Lactococcus lactis subsp. cremoris KW2

60

91.413

0.548
  recA Streptococcus mutans UA159

59.517

91.69

0.546
  recA Streptococcus mitis SK321

59.697

91.413

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

93.075

0.543
  recA Streptococcus pyogenes NZ131

58.788

91.413

0.537