Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VCBK1071_RS11400 Genome accession   NZ_LT897797
Coordinates   2464671..2465735 (-) Length   354 a.a.
NCBI ID   WP_000344156.1    Uniprot ID   A5F9B5
Organism   Vibrio cholerae isolate Vibrio cholerae str. BC1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2459671..2470735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCBK1071_RS11385 (VCBK1071_02235) - 2459936..2461123 (-) 1188 WP_002046435.1 aspartate kinase -
  VCBK1071_RS11390 (VCBK1071_02236) alaS 2461327..2463909 (-) 2583 WP_000481018.1 alanine--tRNA ligase -
  VCBK1071_RS11395 (VCBK1071_02237) recX 2464082..2464540 (-) 459 WP_101411047.1 recombination regulator RecX -
  VCBK1071_RS11400 (VCBK1071_02238) recA 2464671..2465735 (-) 1065 WP_000344156.1 recombinase RecA Machinery gene
  VCBK1071_RS11405 (VCBK1071_02239) pncC 2465869..2466375 (-) 507 WP_000853812.1 nicotinamide-nucleotide amidase -
  VCBK1071_RS11410 (VCBK1071_02240) - 2466542..2467672 (-) 1131 WP_002051153.1 sulfate/molybdate ABC transporter ATP-binding protein -
  VCBK1071_RS11415 (VCBK1071_02241) cysW 2467669..2468532 (-) 864 WP_000951359.1 sulfate ABC transporter permease subunit CysW -
  VCBK1071_RS11420 (VCBK1071_02242) cysT 2468543..2469394 (-) 852 WP_101411049.1 sulfate/thiosulfate ABC transporter permease CysT -
  VCBK1071_RS11425 (VCBK1071_02243) cysP 2469471..2470472 (-) 1002 WP_101411051.1 thiosulfate ABC transporter substrate-binding protein CysP -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38207.84 Da        Isoelectric Point: 5.0766

>NTDB_id=1031377 VCBK1071_RS11400 WP_000344156.1 2464671..2465735(-) (recA) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLTGETASAADDVEFGAVPEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1031377 VCBK1071_RS11400 WP_000344156.1 2464671..2465735(-) (recA) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GCCTACCAATGGGGCGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCGCAACGTGAAGGCAAAACCTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCGGTTTATGCCAAGAAACTGGG
CGTGAATATCGATGAGCTGCTGGTTTCTCAGCCTGATACCGGCGAGCAAGCACTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCGGTAGATGTCATCGTTGTTGACTCGGTCGCGGCTTTGACACCAAAAGCGGAAATCGAAGGCGAAATGGGTGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCGATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCGGCACCGTTTAAAGAAGCCAACACTCAGATCATGTACGGCCAAGGTTT
CAACCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAGATGGTTGAAAAGTCAGGCGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAATCCAGAGATTGCTAAGACGTTAGACAAA
AAACTGCGTGAAATGCTGCTTAACCCAGAGAACATGCAACTGACTGGTGAAACGGCTTCTGCCGCTGATGATGTAGAATT
TGGTGCAGTGCCAGAAGAGTTTTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A5F9B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

99.153

100

0.992
  recA Vibrio cholerae O1 biovar El Tor strain E7946

99.153

100

0.992
  recA Pseudomonas stutzeri DSM 10701

75.841

92.373

0.701
  recA Glaesserella parasuis strain SC1401

68.946

99.153

0.684
  recA Acinetobacter baumannii D1279779

73.7

92.373

0.681
  recA Acinetobacter baylyi ADP1

73.394

92.373

0.678
  recA Acinetobacter nosocomialis M2

73.394

92.373

0.678
  recA Neisseria gonorrhoeae MS11

67.232

100

0.672
  recA Neisseria gonorrhoeae strain FA1090

67.232

100

0.672
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.853

0.627
  recA Staphylococcus aureus strain ATCC 12600

65.644

92.09

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.739

97.458

0.602
  recA Helicobacter pylori strain NCTC11637

61.062

95.763

0.585
  recA Helicobacter pylori 26695

60.767

95.763

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae R36A

62.848

91.243

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.503

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Streptococcus thermophilus LMG 18311

61.231

91.808

0.562
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Streptococcus thermophilus LMD-9

61.231

91.808

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.615

91.808

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

90.678

0.551